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A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses.
Hakimzadeh A, Abdala Asbun A, Albanese D, Bernard M, Buchner D, Callahan B, Caporaso JG, Curd E, Djemiel C, Brandström Durling M, Elbrecht V, Gold Z, Gweon HS, Hajibabaei M, Hildebrand F, Mikryukov V, Normandeau E, Özkurt E, M Palmer J, Pascal G, Porter TM, Straub D, Vasar M, Větrovský T, Zafeiropoulos H, Anslan S. Hakimzadeh A, et al. Among authors: vasar m. Mol Ecol Resour. 2023 Aug 7:10.1111/1755-0998.13847. doi: 10.1111/1755-0998.13847. Online ahead of print. Mol Ecol Resour. 2023. PMID: 37548515
Metabarcoding of soil environmental DNA to estimate plant diversity globally.
Vasar M, Davison J, Moora M, Sepp SK, Anslan S, Al-Quraishy S, Bahram M, Bueno CG, Cantero JJ, Fabiano EC, Decocq G, Drenkhan R, Fraser L, Oja J, Garibay-Orijel R, Hiiesalu I, Koorem K, Mucina L, Öpik M, Põlme S, Pärtel M, Phosri C, Semchenko M, Vahter T, Doležal J, Palacios AMV, Tedersoo L, Zobel M. Vasar M, et al. Front Plant Sci. 2023 Apr 18;14:1106617. doi: 10.3389/fpls.2023.1106617. eCollection 2023. Front Plant Sci. 2023. PMID: 37143888 Free PMC article.
Sequence variation in nuclear ribosomal small subunit, internal transcribed spacer and large subunit regions of Rhizophagus irregularis and Gigaspora margarita is high and isolate-dependent.
Thiéry O, Vasar M, Jairus T, Davison J, Roux C, Kivistik PA, Metspalu A, Milani L, Saks Ü, Moora M, Zobel M, Öpik M. Thiéry O, et al. Among authors: vasar m. Mol Ecol. 2016 Jun;25(12):2816-32. doi: 10.1111/mec.13655. Epub 2016 May 18. Mol Ecol. 2016. PMID: 27092961
Temperature and pH define the realised niche space of arbuscular mycorrhizal fungi.
Davison J, Moora M, Semchenko M, Adenan SB, Ahmed T, Akhmetzhanova AA, Alatalo JM, Al-Quraishy S, Andriyanova E, Anslan S, Bahram M, Batbaatar A, Brown C, Bueno CG, Cahill J, Cantero JJ, Casper BB, Cherosov M, Chideh S, Coelho AP, Coghill M, Decocq G, Dudov S, Fabiano EC, Fedosov VE, Fraser L, Glassman SI, Helm A, Henry HAL, Hérault B, Hiiesalu I, Hiiesalu I, Hozzein WN, Kohout P, Kõljalg U, Koorem K, Laanisto L, Mander Ü, Mucina L, Munyampundu JP, Neuenkamp L, Niinemets Ü, Nyamukondiwa C, Oja J, Onipchenko V, Pärtel M, Phosri C, Põlme S, Püssa K, Ronk A, Saitta A, Semboli O, Sepp SK, Seregin A, Sudheer S, Peña-Venegas CP, Paz C, Vahter T, Vasar M, Veraart AJ, Tedersoo L, Zobel M, Öpik M. Davison J, et al. Among authors: vasar m. New Phytol. 2021 Jul;231(2):763-776. doi: 10.1111/nph.17240. Epub 2021 Mar 4. New Phytol. 2021. PMID: 33507570 Free article.
55 results