Varizhuk AM - Search Results

1

Oligonucleotide Primers with G^8AE-Clamp Modifications for RT-qPCR Detection of the Low-Copy dsRNA.

Zatsepin TS, Varizhuk AM, Dedkov VG, Shipulin GA, Aralov AV. Zatsepin TS, et al. Among authors: varizhuk am. Methods Mol Biol. 2019;1973:281-297. doi: 10.1007/978-1-4939-9216-4_18. Methods Mol Biol. 2019. PMID: 31016709

2

Synthesis of oligonucleotides containing novel G-clamp analogue with C8-tethered group in phenoxazine ring: Implication to qPCR detection of the low-copy Kemerovo virus dsRNA.

Varizhuk AM, Zatsepin TS, Golovin AV, Belyaev ES, Kostyukevich YI, Dedkov VG, Shipulin GA, Shpakovski GV, Aralov AV. Varizhuk AM, et al. Bioorg Med Chem. 2017 Jul 15;25(14):3597-3605. doi: 10.1016/j.bmc.2017.03.062. Epub 2017 Mar 31. Bioorg Med Chem. 2017. PMID: 28396019

3

i-Clamp phenoxazine for the fine tuning of DNA i-motif stability.

Tsvetkov VB, Zatsepin TS, Belyaev ES, Kostyukevich YI, Shpakovski GV, Podgorsky VV, Pozmogova GE, Varizhuk AM, Aralov AV. Tsvetkov VB, et al. Among authors: varizhuk am. Nucleic Acids Res. 2018 Apr 6;46(6):2751-2764. doi: 10.1093/nar/gky121. Nucleic Acids Res. 2018. PMID: 29474573 Free PMC article.

4

Benzothiazole-based cyanines as fluorescent "light-up" probes for duplex and quadruplex DNA.

Turaev AV, Tsvetkov VB, Tankevich MV, Smirnov IP, Aralov AV, Pozmogova GE, Varizhuk AM. Turaev AV, et al. Among authors: varizhuk am. Biochimie. 2019 Jul;162:216-228. doi: 10.1016/j.biochi.2019.04.018. Epub 2019 Apr 22. Biochimie. 2019. PMID: 31022429

5

DNA i-Motifs With Guanidino-i-Clamp Residues: The Counterplay Between Kinetics and Thermodynamics and Implications for the Design of pH Sensors.

Tsvetkov VB, Zatsepin TS, Turaev AV, Farzan VM, Pozmogova GE, Aralov AV, Varizhuk AM. Tsvetkov VB, et al. Among authors: varizhuk am. Comput Struct Biotechnol J. 2019 Apr 13;17:527-536. doi: 10.1016/j.csbj.2019.04.006. eCollection 2019. Comput Struct Biotechnol J. 2019. PMID: 31049164 Free PMC article.

6

Short Duplex Module Coupled to G-Quadruplexes Increases Fluorescence of Synthetic GFP Chromophore Analogues.

Zaitseva SO, Baleeva NS, Zatsepin TS, Myasnyanko IN, Turaev AV, Pozmogova GE, Khrulev AA, Varizhuk AM, Baranov MS, Aralov AV. Zaitseva SO, et al. Among authors: varizhuk am. Sensors (Basel). 2020 Feb 9;20(3):915. doi: 10.3390/s20030915. Sensors (Basel). 2020. PMID: 32050425 Free PMC article.

7

Phenoxazine-based scaffold for designing G4-interacting agents.

Tsvetkov VB, Varizhuk AM, Lizunova SA, Nikolenko TA, Ivanov IA, Severov VV, Belyaev ES, Shitikov EA, Pozmogova GE, Aralov AV. Tsvetkov VB, et al. Among authors: varizhuk am. Org Biomol Chem. 2020 Aug 12;18(31):6147-6154. doi: 10.1039/d0ob00983k. Org Biomol Chem. 2020. PMID: 32719836

8

Genomic DNA i-motifs as fast sensors responsive to near-physiological pH microchanges.

Turaev AV, Isaakova EA, Severov VV, Bogomazova AN, Zatsepin TS, Sardushkin MV, Aralov AV, Lagarkova MA, Pozmogova GE, Varizhuk AM. Turaev AV, et al. Among authors: varizhuk am. Biosens Bioelectron. 2021 Mar 1;175:112864. doi: 10.1016/j.bios.2020.112864. Epub 2020 Dec 2. Biosens Bioelectron. 2021. PMID: 33309217

9

Phenoxazine pseudonucleotides in DNA i-motifs allow precise profiling of small molecule binders by fluorescence monitoring.

Tsvetkov VB, Turaev AV, Petrunina NA, Melnik DM, Khodarovich YM, Pozmogova GE, Zatsepin TS, Varizhuk AM, Aralov AV. Tsvetkov VB, et al. Among authors: varizhuk am. Analyst. 2021 Jul 21;146(14):4436-4440. doi: 10.1039/d1an00660f. Epub 2021 Jun 16. Analyst. 2021. PMID: 34132709

10

7,8-Dihydro-8-oxo-1,N6-ethenoadenine: an exclusively Hoogsteen-paired thymine mimic in DNA that induces A→T transversions in Escherichia coli.

Aralov AV, Gubina N, Cabrero C, Tsvetkov VB, Turaev AV, Fedeles BI, Croy RG, Isaakova EA, Melnik D, Dukova S, Ryazantsev DY, Khrulev AA, Varizhuk AM, González C, Zatsepin TS, Essigmann JM. Aralov AV, et al. Among authors: varizhuk am. Nucleic Acids Res. 2022 Apr 8;50(6):3056-3069. doi: 10.1093/nar/gkac148. Nucleic Acids Res. 2022. PMID: 35234900 Free PMC article.

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