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Customized optical mapping by CRISPR-Cas9 mediated DNA labeling with multiple sgRNAs.
Nucleic Acids Res. 2021 Jan 25;49(2):e8. doi: 10.1093/nar/gkaa1088.
Nucleic Acids Res. 2021.
PMID: 33231685
Free PMC article.
Single-molecule analysis of subtelomeres and telomeres in Alternative Lengthening of Telomeres (ALT) cells.
Abid HZ, McCaffrey J, Raseley K, Young E, Lassahn K, Varapula D, Riethman H, Xiao M.
Abid HZ, et al. Among authors: varapula d.
BMC Genomics. 2020 Jul 15;21(1):485. doi: 10.1186/s12864-020-06901-7.
BMC Genomics. 2020.
PMID: 32669102
Free PMC article.
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A micropatterned substrate for on-surface enzymatic labelling of linearized long DNA molecules.
Varapula D, LaBouff E, Raseley K, Uppuluri L, Ehrlich GD, Noh M, Xiao M.
Varapula D, et al.
Sci Rep. 2019 Oct 21;9(1):15059. doi: 10.1038/s41598-019-51507-z.
Sci Rep. 2019.
PMID: 31636335
Free PMC article.
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Single-molecule telomere length characterization by optical mapping in nano-channel array: Perspective and review on telomere length measurement.
Uppuluri L, Varapula D, Young E, Riethman H, Xiao M.
Uppuluri L, et al. Among authors: varapula d.
Environ Toxicol Pharmacol. 2021 Feb;82:103562. doi: 10.1016/j.etap.2020.103562. Epub 2020 Dec 10.
Environ Toxicol Pharmacol. 2021.
PMID: 33310082
Free PMC article.
Review.
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A long-read sequencing strategy with overlapping linkers on adjacent fragments (OLAF-Seq) for targeted resequencing and enrichment.
Uppuluri L, Shi CH, Varapula D, Young E, Ehrlich RL, Wang Y, Piazza D, Mell JC, Yip KY, Xiao M.
Uppuluri L, et al. Among authors: varapula d.
Sci Rep. 2024 Mar 7;14(1):5583. doi: 10.1038/s41598-024-56402-w.
Sci Rep. 2024.
PMID: 38448490
Free PMC article.
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