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Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision.
Vromman M, Anckaert J, Bortoluzzi S, Buratin A, Chen CY, Chu Q, Chuang TJ, Dehghannasiri R, Dieterich C, Dong X, Flicek P, Gaffo E, Gu W, He C, Hoffmann S, Izuogu O, Jackson MS, Jakobi T, Lai EC, Nuytens J, Salzman J, Santibanez-Koref M, Stadler P, Thas O, Vanden Eynde E, Verniers K, Wen G, Westholm J, Yang L, Ye CY, Yigit N, Yuan GH, Zhang J, Zhao F, Vandesompele J, Volders PJ. Vromman M, et al. Among authors: vandesompele j. Nat Methods. 2023 Aug;20(8):1159-1169. doi: 10.1038/s41592-023-01944-6. Epub 2023 Jul 13. Nat Methods. 2023. PMID: 37443337 Free PMC article.
Rapid detection of VHL exon deletions using real-time quantitative PCR.
Hoebeeck J, van der Luijt R, Poppe B, De Smet E, Yigit N, Claes K, Zewald R, de Jong GJ, De Paepe A, Speleman F, Vandesompele J. Hoebeeck J, et al. Among authors: vandesompele j. Lab Invest. 2005 Jan;85(1):24-33. doi: 10.1038/labinvest.3700209. Lab Invest. 2005. PMID: 15608663 Free article.
Measurable impact of RNA quality on gene expression results from quantitative PCR.
Vermeulen J, De Preter K, Lefever S, Nuytens J, De Vloed F, Derveaux S, Hellemans J, Speleman F, Vandesompele J. Vermeulen J, et al. Among authors: vandesompele j. Nucleic Acids Res. 2011 May;39(9):e63. doi: 10.1093/nar/gkr065. Epub 2011 Feb 11. Nucleic Acids Res. 2011. PMID: 21317187 Free PMC article.
miRBase Tracker: keeping track of microRNA annotation changes.
Van Peer G, Lefever S, Anckaert J, Beckers A, Rihani A, Van Goethem A, Volders PJ, Zeka F, Ongenaert M, Mestdagh P, Vandesompele J. Van Peer G, et al. Among authors: vandesompele j. Database (Oxford). 2014 Aug 25;2014:bau080. doi: 10.1093/database/bau080. Print 2014. Database (Oxford). 2014. PMID: 25157074 Free PMC article.
An update on LNCipedia: a database for annotated human lncRNA sequences.
Volders PJ, Verheggen K, Menschaert G, Vandepoele K, Martens L, Vandesompele J, Mestdagh P. Volders PJ, et al. Among authors: vandesompele j. Nucleic Acids Res. 2015 Jan;43(Database issue):D174-80. doi: 10.1093/nar/gku1060. Epub 2014 Nov 5. Nucleic Acids Res. 2015. PMID: 25378313 Free PMC article.
Genome wide expression profiling of p53 regulated miRNAs in neuroblastoma.
Rihani A, Van Goethem A, Ongenaert M, De Brouwer S, Volders PJ, Agarwal S, De Preter K, Mestdagh P, Shohet J, Speleman F, Vandesompele J, Van Maerken T. Rihani A, et al. Among authors: vandesompele j. Sci Rep. 2015 Mar 12;5:9027. doi: 10.1038/srep09027. Sci Rep. 2015. PMID: 25762502 Free PMC article.
Targeted resequencing and variant validation using pxlence PCR assays.
Coppieters F, Verniers K, De Leeneer K, Vandesompele J, Lefever S. Coppieters F, et al. Among authors: vandesompele j. Biomol Detect Quantif. 2015 Oct 9;6:22-6. doi: 10.1016/j.bdq.2015.09.001. eCollection 2016 Jan. Biomol Detect Quantif. 2015. PMID: 27077044 Free PMC article.
333 results