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ELM 2016--data update and new functionality of the eukaryotic linear motif resource.
Dinkel H, Van Roey K, Michael S, Kumar M, Uyar B, Altenberg B, Milchevskaya V, Schneider M, Kühn H, Behrendt A, Dahl SL, Damerell V, Diebel S, Kalman S, Klein S, Knudsen AC, Mäder C, Merrill S, Staudt A, Thiel V, Welti L, Davey NE, Diella F, Gibson TJ. Dinkel H, et al. Among authors: van roey k. Nucleic Acids Res. 2016 Jan 4;44(D1):D294-300. doi: 10.1093/nar/gkv1291. Epub 2015 Nov 28. Nucleic Acids Res. 2016. PMID: 26615199 Free PMC article.
Attributes of short linear motifs.
Davey NE, Van Roey K, Weatheritt RJ, Toedt G, Uyar B, Altenberg B, Budd A, Diella F, Dinkel H, Gibson TJ. Davey NE, et al. Among authors: van roey k. Mol Biosyst. 2012 Jan;8(1):268-81. doi: 10.1039/c1mb05231d. Epub 2011 Sep 12. Mol Biosyst. 2012. PMID: 21909575
ELM--the database of eukaryotic linear motifs.
Dinkel H, Michael S, Weatheritt RJ, Davey NE, Van Roey K, Altenberg B, Toedt G, Uyar B, Seiler M, Budd A, Jödicke L, Dammert MA, Schroeter C, Hammer M, Schmidt T, Jehl P, McGuigan C, Dymecka M, Chica C, Luck K, Via A, Chatr-Aryamontri A, Haslam N, Grebnev G, Edwards RJ, Steinmetz MO, Meiselbach H, Diella F, Gibson TJ. Dinkel H, et al. Among authors: van roey k. Nucleic Acids Res. 2012 Jan;40(Database issue):D242-51. doi: 10.1093/nar/gkr1064. Epub 2011 Nov 21. Nucleic Acids Res. 2012. PMID: 22110040 Free PMC article.
Motif switches: decision-making in cell regulation.
Van Roey K, Gibson TJ, Davey NE. Van Roey K, et al. Curr Opin Struct Biol. 2012 Jun;22(3):378-85. doi: 10.1016/j.sbi.2012.03.004. Epub 2012 Apr 3. Curr Opin Struct Biol. 2012. PMID: 22480932 Review.
Capturing cooperative interactions with the PSI-MI format.
Van Roey K, Orchard S, Kerrien S, Dumousseau M, Ricard-Blum S, Hermjakob H, Gibson TJ. Van Roey K, et al. Database (Oxford). 2013 Sep 25;2013:bat066. doi: 10.1093/database/bat066. Print 2013. Database (Oxford). 2013. PMID: 24067240 Free PMC article.
The eukaryotic linear motif resource ELM: 10 years and counting.
Dinkel H, Van Roey K, Michael S, Davey NE, Weatheritt RJ, Born D, Speck T, Krüger D, Grebnev G, Kuban M, Strumillo M, Uyar B, Budd A, Altenberg B, Seiler M, Chemes LB, Glavina J, Sánchez IE, Diella F, Gibson TJ. Dinkel H, et al. Among authors: van roey k. Nucleic Acids Res. 2014 Jan;42(Database issue):D259-66. doi: 10.1093/nar/gkt1047. Epub 2013 Nov 7. Nucleic Acids Res. 2014. PMID: 24214962 Free PMC article.
The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases.
Orchard S, Ammari M, Aranda B, Breuza L, Briganti L, Broackes-Carter F, Campbell NH, Chavali G, Chen C, del-Toro N, Duesbury M, Dumousseau M, Galeota E, Hinz U, Iannuccelli M, Jagannathan S, Jimenez R, Khadake J, Lagreid A, Licata L, Lovering RC, Meldal B, Melidoni AN, Milagros M, Peluso D, Perfetto L, Porras P, Raghunath A, Ricard-Blum S, Roechert B, Stutz A, Tognolli M, van Roey K, Cesareni G, Hermjakob H. Orchard S, et al. Among authors: van roey k. Nucleic Acids Res. 2014 Jan;42(Database issue):D358-63. doi: 10.1093/nar/gkt1115. Epub 2013 Nov 13. Nucleic Acids Res. 2014. PMID: 24234451 Free PMC article.
29 results