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A chromosome-level Amaranthus cruentus genome assembly highlights gene family evolution and biosynthetic gene clusters that may underpin the nutritional value of this traditional crop.
Ma X, Vaistij FE, Li Y, Jansen van Rensburg WS, Harvey S, Bairu MW, Venter SL, Mavengahama S, Ning Z, Graham IA, Van Deynze A, Van de Peer Y, Denby KJ. Ma X, et al. Among authors: van de peer y, van deynze a. Plant J. 2021 Jul;107(2):613-628. doi: 10.1111/tpj.15298. Epub 2021 Jun 24. Plant J. 2021. PMID: 33960539 Free article.
The draft genomes of five agriculturally important African orphan crops.
Chang Y, Liu H, Liu M, Liao X, Sahu SK, Fu Y, Song B, Cheng S, Kariba R, Muthemba S, Hendre PS, Mayes S, Ho WK, Yssel AEJ, Kendabie P, Wang S, Li L, Muchugi A, Jamnadass R, Lu H, Peng S, Van Deynze A, Simons A, Yana-Shapiro H, Van de Peer Y, Xu X, Yang H, Wang J, Liu X. Chang Y, et al. Among authors: van de peer y, van deynze a. Gigascience. 2019 Mar 1;8(3):giy152. doi: 10.1093/gigascience/giy152. Gigascience. 2019. PMID: 30535374 Free PMC article.
Genome sequence and genetic diversity analysis of an under-domesticated orphan crop, white fonio (Digitaria exilis).
Wang X, Chen S, Ma X, Yssel AEJ, Chaluvadi SR, Johnson MS, Gangashetty P, Hamidou F, Sanogo MD, Zwaenepoel A, Wallace J, Van de Peer Y, Bennetzen JL, Van Deynze A. Wang X, et al. Among authors: van de peer y, van deynze a. Gigascience. 2021 Mar 12;10(3):giab013. doi: 10.1093/gigascience/giab013. Gigascience. 2021. PMID: 33710327 Free PMC article.
Genomic Resources to Guide Improvement of the Shea Tree.
Hale I, Ma X, Melo ATO, Padi FK, Hendre PS, Kingan SB, Sullivan ST, Chen S, Boffa JM, Muchugi A, Danquah A, Barnor MT, Jamnadass R, Van de Peer Y, Van Deynze A. Hale I, et al. Among authors: van de peer y, van deynze a. Front Plant Sci. 2021 Sep 9;12:720670. doi: 10.3389/fpls.2021.720670. eCollection 2021. Front Plant Sci. 2021. PMID: 34567033 Free PMC article.
Chromosome-scale assembly of the Moringa oleifera Lam. genome uncovers polyploid history and evolution of secondary metabolism pathways through tandem duplication.
Chang J, Marczuk-Rojas JP, Waterman C, Garcia-Llanos A, Chen S, Ma X, Hulse-Kemp A, Van Deynze A, Van de Peer Y, Carretero-Paulet L. Chang J, et al. Among authors: van deynze a. Plant Genome. 2022 Sep;15(3):e20238. doi: 10.1002/tpg2.20238. Epub 2022 Jul 27. Plant Genome. 2022. PMID: 35894687 Free article.
Sampling nucleotide diversity in cotton.
Van Deynze A, Stoffel K, Lee M, Wilkins TA, Kozik A, Cantrell RG, Yu JZ, Kohel RJ, Stelly DM. Van Deynze A, et al. BMC Plant Biol. 2009 Oct 20;9:125. doi: 10.1186/1471-2229-9-125. BMC Plant Biol. 2009. PMID: 19840401 Free PMC article.
Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.).
Stoffel K, van Leeuwen H, Kozik A, Caldwell D, Ashrafi H, Cui X, Tan X, Hill T, Reyes-Chin-Wo S, Truco MJ, Michelmore RW, Van Deynze A. Stoffel K, et al. Among authors: van leeuwen h, van deynze a. BMC Genomics. 2012 May 14;13:185. doi: 10.1186/1471-2164-13-185. BMC Genomics. 2012. PMID: 22583801 Free PMC article.
83 results