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High-Throughput Virtual Screening and Validation of a SARS-CoV-2 Main Protease Noncovalent Inhibitor.
Clyde A, Galanie S, Kneller DW, Ma H, Babuji Y, Blaiszik B, Brace A, Brettin T, Chard K, Chard R, Coates L, Foster I, Hauner D, Kertesz V, Kumar N, Lee H, Li Z, Merzky A, Schmidt JG, Tan L, Titov M, Trifan A, Turilli M, Van Dam H, Chennubhotla SC, Jha S, Kovalevsky A, Ramanathan A, Head MS, Stevens R. Clyde A, et al. Among authors: van dam h. J Chem Inf Model. 2022 Jan 10;62(1):116-128. doi: 10.1021/acs.jcim.1c00851. Epub 2021 Nov 18. J Chem Inf Model. 2022. PMID: 34793155 Free article.
PluginPlay: Enabling exascale scientific software one module at a time.
Richard RM, Keipert K, Waldrop J, Keçeli M, Williams-Young D, Bair R, Boschen J, Crandall Z, Gasperich K, Mahmud QI, Panyala A, Valeev E, van Dam H, de Jong WA, Windus TL. Richard RM, et al. Among authors: van dam h. J Chem Phys. 2023 May 14;158(18):184801. doi: 10.1063/5.0147903. J Chem Phys. 2023. PMID: 37171197
A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria.
Grosjean N, Yee EF, Kumaran D, Chopra K, Abernathy M, Biswas S, Byrnes J, Kreitler DF, Cheng JF, Ghosh A, Almo SC, Iwai M, Niyogi KK, Pakrasi HB, Sarangi R, van Dam H, Yang L, Blaby IK, Blaby-Haas CE. Grosjean N, et al. Among authors: van dam h. Nat Commun. 2024 Apr 12;15(1):3167. doi: 10.1038/s41467-024-47486-z. Nat Commun. 2024. PMID: 38609367 Free PMC article.
USP16 is an ISG15 cross-reactive deubiquitinase that targets pro-ISG15 and ISGylated proteins involved in metabolism.
Gan J, Pinto-Fernández A, Flierman D, Akkermans JJLL, O'Brien DP, Greenwood H, Scott HC, Fritz G, Knobeloch KP, Neefjes J, van Dam H, Ovaa H, Ploegh HL, Kessler BM, Geurink PP, Sapmaz A. Gan J, et al. Among authors: van dam h. Proc Natl Acad Sci U S A. 2023 Dec 12;120(50):e2315163120. doi: 10.1073/pnas.2315163120. Epub 2023 Dec 6. Proc Natl Acad Sci U S A. 2023. PMID: 38055744
Cellular Validation of a Chemically Improved Inhibitor Identifies Monoubiquitination on OTUB2.
Gan J, de Vries J, Akkermans JJLL, Mohammed Y, Tjokrodirijo RTN, de Ru AH, Kim RQ, Vargas DA, Pol V, Fasan R, van Veelen PA, Neefjes J, van Dam H, Ovaa H, Sapmaz A, Geurink PP. Gan J, et al. Among authors: van dam h. ACS Chem Biol. 2023 Sep 15;18(9):2003-2013. doi: 10.1021/acschembio.3c00227. Epub 2023 Aug 29. ACS Chem Biol. 2023. PMID: 37642399 Free PMC article.
European river typologies fail to capture diatom, fish, and macrophyte community composition.
Jupke JF, Birk S, Apostolou A, Aroviita J, Baattrup-Pedersen A, Baláži P, Barešová L, Blanco S, Borrego-Ramos M, van Dam H, Dimitriou E, Feld CK, Ferreira MT, Gecheva G, Gomà J, Hanžek N, Haslev IM, Isheva T, Jamoneau A, Jyrkänkallio-Mikkola J, Kahlert M, Karaouzas I, Karjalainen SM, Olenici A, Panek P, Paril P, Peeters ETHM, Polášek M, Pont D, Pumputyte A, Sandin L, Sochuliaková L, Soininen J, Stanković I, Straka M, Šušnjara M, Sutela T, Tison-Rosebery J, Udovič MG, Verhofstad M, Žutinić P, Schäfer RB. Jupke JF, et al. Among authors: van dam h. Sci Total Environ. 2023 Oct 20;896:165081. doi: 10.1016/j.scitotenv.2023.165081. Epub 2023 Jun 23. Sci Total Environ. 2023. PMID: 37355122
A Pro-Fluorescent Ubiquitin-Based Probe to Monitor Cysteine-Based E3 Ligase Activity.
Pérez Berrocal DA, Vishwanatha TM, Horn-Ghetko D, Botsch JJ, Hehl LA, Kostrhon S, Misra M, Ðikić I, Geurink PP, van Dam H, Schulman BA, Mulder MPC. Pérez Berrocal DA, et al. Among authors: van dam h. Angew Chem Int Ed Engl. 2023 Aug 7;62(32):e202303319. doi: 10.1002/anie.202303319. Epub 2023 Jun 27. Angew Chem Int Ed Engl. 2023. PMID: 37272691
146 results