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Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database.
Saltykova A, Van Braekel J, Papazova N, Fraiture MA, Deforce D, Vanneste K, De Keersmaecker SCJ, Roosens NH. Saltykova A, et al. Among authors: van braekel j. Food Chem (Oxf). 2022 Mar 7;4:100096. doi: 10.1016/j.fochms.2022.100096. eCollection 2022 Jul 30. Food Chem (Oxf). 2022. PMID: 35415691 Free PMC article.
Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: Neisseria meningitidis as a Proof-of-Concept.
Bogaerts B, Winand R, Fu Q, Van Braekel J, Ceyssens PJ, Mattheus W, Bertrand S, De Keersmaecker SCJ, Roosens NHC, Vanneste K. Bogaerts B, et al. Among authors: van braekel j. Front Microbiol. 2019 Mar 6;10:362. doi: 10.3389/fmicb.2019.00362. eCollection 2019. Front Microbiol. 2019. PMID: 30894839 Free PMC article.
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods.
Bogaerts B, Nouws S, Verhaegen B, Denayer S, Van Braekel J, Winand R, Fu Q, Crombé F, Piérard D, Marchal K, Roosens NHC, De Keersmaecker SCJ, Vanneste K. Bogaerts B, et al. Among authors: van braekel j. Microb Genom. 2021 Mar;7(3):mgen000531. doi: 10.1099/mgen.0.000531. Epub 2021 Mar 3. Microb Genom. 2021. PMID: 33656437 Free PMC article.
A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico Approaches.
Bogaerts B, Delcourt T, Soetaert K, Boarbi S, Ceyssens PJ, Winand R, Van Braekel J, De Keersmaecker SCJ, Roosens NHC, Marchal K, Mathys V, Vanneste K. Bogaerts B, et al. Among authors: van braekel j. J Clin Microbiol. 2021 May 19;59(6):e00202-21. doi: 10.1128/JCM.00202-21. Print 2021 May 19. J Clin Microbiol. 2021. PMID: 33789960 Free PMC article.
Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic Circulation.
Bogaerts B, Winand R, Van Braekel J, Mattheus W, De Keersmaecker SCJ, Roosens NHC, Marchal K, Vanneste K, Ceyssens PJ. Bogaerts B, et al. Among authors: van braekel j. Microorganisms. 2021 Apr 6;9(4):767. doi: 10.3390/microorganisms9040767. Microorganisms. 2021. PMID: 33917583 Free PMC article.