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Recommendations for the introduction of metagenomic high-throughput sequencing in clinical virology, part I: Wet lab procedure.
López-Labrador FX, Brown JR, Fischer N, Harvala H, Van Boheemen S, Cinek O, Sayiner A, Madsen TV, Auvinen E, Kufner V, Huber M, Rodriguez C, Jonges M, Hönemann M, Susi P, Sousa H, Klapper PE, Pérez-Cataluňa A, Hernandez M, Molenkamp R, der Hoek LV, Schuurman R, Couto N, Leuzinger K, Simmonds P, Beer M, Höper D, Kamminga S, Feltkamp MCW, Rodríguez-Díaz J, Keyaerts E, Nielsen XC, Puchhammer-Stöckl E, Kroes ACM, Buesa J, Breuer J, Claas ECJ, de Vries JJC; ESCV Network on Next-Generation Sequencing. López-Labrador FX, et al. Among authors: van boheemen s. J Clin Virol. 2021 Jan;134:104691. doi: 10.1016/j.jcv.2020.104691. Epub 2020 Nov 18. J Clin Virol. 2021. PMID: 33278791 Free article.
The respiratory virome and exacerbations in patients with chronic obstructive pulmonary disease.
van Rijn AL, van Boheemen S, Sidorov I, Carbo EC, Pappas N, Mei H, Feltkamp M, Aanerud M, Bakke P, Claas ECJ, Eagan TM, Hiemstra PS, Kroes ACM, de Vries JJC. van Rijn AL, et al. Among authors: van boheemen s. PLoS One. 2019 Oct 24;14(10):e0223952. doi: 10.1371/journal.pone.0223952. eCollection 2019. PLoS One. 2019. PMID: 31647831 Free PMC article.
Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples.
de Vries JJC, Brown JR, Fischer N, Sidorov IA, Morfopoulou S, Huang J, Munnink BBO, Sayiner A, Bulgurcu A, Rodriguez C, Gricourt G, Keyaerts E, Beller L, Bachofen C, Kubacki J, Samuel C, Florian L, Dennis S, Beer M, Hoeper D, Huber M, Kufner V, Zaheri M, Lebrand A, Papa A, van Boheemen S, Kroes ACM, Breuer J, Lopez-Labrador FX, Claas ECJ. de Vries JJC, et al. Among authors: van boheemen s. J Clin Virol. 2021 Aug;141:104908. doi: 10.1016/j.jcv.2021.104908. Epub 2021 Jul 8. J Clin Virol. 2021. PMID: 34273858 Free PMC article.
Excessive production and extreme editing of human metapneumovirus defective interfering RNA is associated with type I IFN induction.
van den Hoogen BG, van Boheemen S, de Rijck J, van Nieuwkoop S, Smith DJ, Laksono B, Gultyaev A, Osterhaus ADME, Fouchier RAM. van den Hoogen BG, et al. Among authors: van nieuwkoop s, van boheemen s. J Gen Virol. 2014 Aug;95(Pt 8):1625-1633. doi: 10.1099/vir.0.066100-0. Epub 2014 Apr 23. J Gen Virol. 2014. PMID: 24760760 Free PMC article.
Diminished amplification of SARS-CoV-2 ORF1ab in a commercial dual-target qRT-PCR diagnostic assay.
Popping S, Molenkamp R, Weigel JD, Mutsaers PGNJ, Voermans JC, van Boheemen S, Shamier MC, Sikkema RS, Nieuwenhuijse DF, Oude Munnink BB, Koopmans MPG, van Kampen JJA. Popping S, et al. Among authors: van boheemen s. J Virol Methods. 2022 Feb;300:114397. doi: 10.1016/j.jviromet.2021.114397. Epub 2021 Dec 1. J Virol Methods. 2022. PMID: 34863783 Free PMC article.
30 results