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BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements.
De Witte D, Van de Velde J, Decap D, Van Bel M, Audenaert P, Demeester P, Dhoedt B, Vandepoele K, Fostier J. De Witte D, et al. Among authors: van bel m, van de velde j. Bioinformatics. 2015 Dec 1;31(23):3758-66. doi: 10.1093/bioinformatics/btv466. Epub 2015 Aug 8. Bioinformatics. 2015. PMID: 26254488 Free PMC article.
Dissecting plant genomes with the PLAZA comparative genomics platform.
Van Bel M, Proost S, Wischnitzki E, Movahedi S, Scheerlinck C, Van de Peer Y, Vandepoele K. Van Bel M, et al. Among authors: van de peer y. Plant Physiol. 2012 Feb;158(2):590-600. doi: 10.1104/pp.111.189514. Epub 2011 Dec 23. Plant Physiol. 2012. PMID: 22198273 Free PMC article.
Toward community standards in the quest for orthologs.
Dessimoz C, Gabaldón T, Roos DS, Sonnhammer EL, Herrero J; Quest for Orthologs Consortium. Dessimoz C, et al. Bioinformatics. 2012 Mar 15;28(6):900-4. doi: 10.1093/bioinformatics/bts050. Epub 2012 Feb 12. Bioinformatics. 2012. PMID: 22332236 Free PMC article.
Comparative co-expression analysis in plant biology.
Movahedi S, Van Bel M, Heyndrickx KS, Vandepoele K. Movahedi S, et al. Among authors: van bel m. Plant Cell Environ. 2012 Oct;35(10):1787-98. doi: 10.1111/j.1365-3040.2012.02517.x. Epub 2012 May 10. Plant Cell Environ. 2012. PMID: 22489681 Free article. Review.
pico-PLAZA, a genome database of microbial photosynthetic eukaryotes.
Vandepoele K, Van Bel M, Richard G, Van Landeghem S, Verhelst B, Moreau H, Van de Peer Y, Grimsley N, Piganeau G. Vandepoele K, et al. Among authors: van landeghem s, van bel m, van de peer y. Environ Microbiol. 2013 Aug;15(8):2147-53. doi: 10.1111/1462-2920.12174. Epub 2013 Jul 4. Environ Microbiol. 2013. PMID: 23826978
Big data and other challenges in the quest for orthologs.
Sonnhammer EL, Gabaldón T, Sousa da Silva AW, Martin M, Robinson-Rechavi M, Boeckmann B, Thomas PD, Dessimoz C; Quest for Orthologs consortium. Sonnhammer EL, et al. Bioinformatics. 2014 Nov 1;30(21):2993-8. doi: 10.1093/bioinformatics/btu492. Epub 2014 Jul 26. Bioinformatics. 2014. PMID: 25064571 Free PMC article.
PLAZA 3.0: an access point for plant comparative genomics.
Proost S, Van Bel M, Vaneechoutte D, Van de Peer Y, Inzé D, Mueller-Roeber B, Vandepoele K. Proost S, et al. Among authors: van bel m, van de peer y. Nucleic Acids Res. 2015 Jan;43(Database issue):D974-81. doi: 10.1093/nar/gku986. Epub 2014 Oct 16. Nucleic Acids Res. 2015. PMID: 25324309 Free PMC article.
41 results