Vallania F - Search Results

1

Cellular senescence impairs the reversibility of pulmonary arterial hypertension.

van der Feen DE, Bossers GPL, Hagdorn QAJ, Moonen JR, Kurakula K, Szulcek R, Chappell J, Vallania F, Donato M, Kok K, Kohli JS, Petersen AH, van Leusden T, Demaria M, Goumans MTH, De Boer RA, Khatri P, Rabinovitch M, Berger RMF, Bartelds B. van der Feen DE, et al. Among authors: vallania f. Sci Transl Med. 2020 Jul 29;12(554):eaaw4974. doi: 10.1126/scitranslmed.aaw4974. Sci Transl Med. 2020. PMID: 32727916 Free PMC article.

2

KLRD1-expressing natural killer cells predict influenza susceptibility.

Bongen E, Vallania F, Utz PJ, Khatri P. Bongen E, et al. Among authors: vallania f. Genome Med. 2018 Jun 14;10(1):45. doi: 10.1186/s13073-018-0554-1. Genome Med. 2018. PMID: 29898768 Free PMC article.

3

META-ANALYSIS OF CONTINUOUS PHENOTYPES IDENTIFIES A GENE SIGNATURE THAT CORRELATES WITH COPD DISEASE STATUS.

Scott M, Vallania F, Khatri P. Scott M, et al. Among authors: vallania f. Pac Symp Biocomput. 2017;22:266-275. doi: 10.1142/9789813207813_0026. Pac Symp Biocomput. 2017. PMID: 27896981 Free PMC article.

4

Methods to increase reproducibility in differential gene expression via meta-analysis.

Sweeney TE, Haynes WA, Vallania F, Ioannidis JP, Khatri P. Sweeney TE, et al. Among authors: vallania f. Nucleic Acids Res. 2017 Jan 9;45(1):e1. doi: 10.1093/nar/gkw797. Epub 2016 Sep 14. Nucleic Acids Res. 2017. PMID: 27634930 Free PMC article.

5

Single-cell epigenetics - Chromatin modification atlas unveiled by mass cytometry.

Cheung P, Vallania F, Dvorak M, Chang SE, Schaffert S, Donato M, Rao AM, Mao R, Utz PJ, Khatri P, Kuo AJ. Cheung P, et al. Among authors: vallania f. Clin Immunol. 2018 Nov;196:40-48. doi: 10.1016/j.clim.2018.06.009. Epub 2018 Jun 28. Clin Immunol. 2018. PMID: 29960011 Free PMC article. Review.

6

Single-Cell Chromatin Modification Profiling Reveals Increased Epigenetic Variations with Aging.

Cheung P, Vallania F, Warsinske HC, Donato M, Schaffert S, Chang SE, Dvorak M, Dekker CL, Davis MM, Utz PJ, Khatri P, Kuo AJ. Cheung P, et al. Among authors: vallania f. Cell. 2018 May 31;173(6):1385-1397.e14. doi: 10.1016/j.cell.2018.03.079. Epub 2018 Apr 26. Cell. 2018. PMID: 29706550 Free PMC article.

7

Multicohort Analysis Identifies Monocyte Gene Signatures to Accurately Monitor Subset-Specific Changes in Human Diseases.

Vallania F, Zisman L, Macaubas C, Hung SC, Rajasekaran N, Mason S, Graf J, Nakamura M, Mellins ED, Khatri P. Vallania F, et al. Front Immunol. 2021 May 14;12:659255. doi: 10.3389/fimmu.2021.659255. eCollection 2021. Front Immunol. 2021. PMID: 34054824 Free PMC article.

8

Leveraging heterogeneity across multiple datasets increases cell-mixture deconvolution accuracy and reduces biological and technical biases.

Vallania F, Tam A, Lofgren S, Schaffert S, Azad TD, Bongen E, Haynes W, Alsup M, Alonso M, Davis M, Engleman E, Khatri P. Vallania F, et al. Nat Commun. 2018 Nov 9;9(1):4735. doi: 10.1038/s41467-018-07242-6. Nat Commun. 2018. PMID: 30413720 Free PMC article.

9

EMPOWERING MULTI-COHORT GENE EXPRESSION ANALYSIS TO INCREASE REPRODUCIBILITY.

Haynes WA, Vallania F, Liu C, Bongen E, Tomczak A, Andres-Terrè M, Lofgren S, Tam A, Deisseroth CA, Li MD, Sweeney TE, Khatri P. Haynes WA, et al. Among authors: vallania f. Pac Symp Biocomput. 2017;22:144-153. doi: 10.1142/9789813207813_0015. Pac Symp Biocomput. 2017. PMID: 27896970 Free PMC article.

10

Interpretation of biological experiments changes with evolution of the Gene Ontology and its annotations.

Tomczak A, Mortensen JM, Winnenburg R, Liu C, Alessi DT, Swamy V, Vallania F, Lofgren S, Haynes W, Shah NH, Musen MA, Khatri P. Tomczak A, et al. Among authors: vallania f. Sci Rep. 2018 Mar 23;8(1):5115. doi: 10.1038/s41598-018-23395-2. Sci Rep. 2018. PMID: 29572502 Free PMC article.

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