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Long-read single-molecule RNA structure sequencing using nanopore.
Bizuayehu TT, Labun K, Jakubec M, Jefimov K, Niazi AM, Valen E. Bizuayehu TT, et al. Among authors: valen e. Nucleic Acids Res. 2022 Nov 11;50(20):e120. doi: 10.1093/nar/gkac775. Nucleic Acids Res. 2022. PMID: 36166000 Free PMC article.
Accurate analysis of genuine CRISPR editing events with ampliCan.
Labun K, Guo X, Chavez A, Church G, Gagnon JA, Valen E. Labun K, et al. Among authors: valen e. Genome Res. 2019 May;29(5):843-847. doi: 10.1101/gr.244293.118. Epub 2019 Mar 8. Genome Res. 2019. PMID: 30850374 Free PMC article.
CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing.
Labun K, Montague TG, Krause M, Torres Cleuren YN, Tjeldnes H, Valen E. Labun K, et al. Among authors: valen e. Nucleic Acids Res. 2019 Jul 2;47(W1):W171-W174. doi: 10.1093/nar/gkz365. Nucleic Acids Res. 2019. PMID: 31106371 Free PMC article.
Deep conservation of ribosome stall sites across RNA processing genes.
Chyżyńska K, Labun K, Jones C, Grellscheid SN, Valen E. Chyżyńska K, et al. Among authors: valen e. NAR Genom Bioinform. 2021 May 25;3(2):lqab038. doi: 10.1093/nargab/lqab038. eCollection 2021 Jun. NAR Genom Bioinform. 2021. PMID: 34056595 Free PMC article.
ORFik: a comprehensive R toolkit for the analysis of translation.
Tjeldnes H, Labun K, Torres Cleuren Y, Chyżyńska K, Świrski M, Valen E. Tjeldnes H, et al. Among authors: valen e. BMC Bioinformatics. 2021 Jun 19;22(1):336. doi: 10.1186/s12859-021-04254-w. BMC Bioinformatics. 2021. PMID: 34147079 Free PMC article.
104 results