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Page 1
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.
Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, Batto JM, Quintanilha Dos Santos MB, Blom N, Borruel N, Burgdorf KS, Boumezbeur F, Casellas F, Doré J, Dworzynski P, Guarner F, Hansen T, Hildebrand F, Kaas RS, Kennedy S, Kristiansen K, Kultima JR, Léonard P, Levenez F, Lund O, Moumen B, Le Paslier D, Pons N, Pedersen O, Prifti E, Qin J, Raes J, Sørensen S, Tap J, Tims S, Ussery DW, Yamada T; MetaHIT Consortium; Renault P, Sicheritz-Ponten T, Bork P, Wang J, Brunak S, Ehrlich SD; MetaHIT Consortium. Nielsen HB, et al. Among authors: ussery dw. Nat Biotechnol. 2014 Aug;32(8):822-8. doi: 10.1038/nbt.2939. Epub 2014 Jul 6. Nat Biotechnol. 2014. PMID: 24997787
Multilocus sequence typing of total-genome-sequenced bacteria.
Larsen MV, Cosentino S, Rasmussen S, Friis C, Hasman H, Marvig RL, Jelsbak L, Sicheritz-Pontén T, Ussery DW, Aarestrup FM, Lund O. Larsen MV, et al. Among authors: ussery dw. J Clin Microbiol. 2012 Apr;50(4):1355-61. doi: 10.1128/JCM.06094-11. Epub 2012 Jan 11. J Clin Microbiol. 2012. PMID: 22238442 Free PMC article.
Benchmarking of methods for genomic taxonomy.
Larsen MV, Cosentino S, Lukjancenko O, Saputra D, Rasmussen S, Hasman H, Sicheritz-Pontén T, Aarestrup FM, Ussery DW, Lund O. Larsen MV, et al. Among authors: ussery dw. J Clin Microbiol. 2014 May;52(5):1529-39. doi: 10.1128/JCM.02981-13. Epub 2014 Feb 26. J Clin Microbiol. 2014. PMID: 24574292 Free PMC article.
A DNA structural atlas for Escherichia coli.
Pedersen AG, Jensen LJ, Brunak S, Staerfeldt HH, Ussery DW. Pedersen AG, et al. Among authors: ussery dw. J Mol Biol. 2000 Jun 16;299(4):907-30. doi: 10.1006/jmbi.2000.3787. J Mol Biol. 2000. PMID: 10843847
Ten years of bacterial genome sequencing: comparative-genomics-based discoveries.
Binnewies TT, Motro Y, Hallin PF, Lund O, Dunn D, La T, Hampson DJ, Bellgard M, Wassenaar TM, Ussery DW. Binnewies TT, et al. Among authors: ussery dw. Funct Integr Genomics. 2006 Jul;6(3):165-85. doi: 10.1007/s10142-006-0027-2. Epub 2006 May 12. Funct Integr Genomics. 2006. PMID: 16773396 Review.
Genome update: prediction of secreted proteins in 225 bacterial proteomes.
Bendtsen JD, Binnewies TT, Hallin PF, Sicheritz-Pontén T, Ussery DW. Bendtsen JD, et al. Among authors: ussery dw. Microbiology (Reading). 2005 Jun;151(Pt 6):1725-1727. doi: 10.1099/mic.0.28029-0. Microbiology (Reading). 2005. PMID: 15941981 Free article. Review. No abstract available.
181 results