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Enabling reusability of plant phenomic datasets with MIAPPE 1.1.
Papoutsoglou EA, Faria D, Arend D, Arnaud E, Athanasiadis IN, Chaves I, Coppens F, Cornut G, Costa BV, Ćwiek-Kupczyńska H, Droesbeke B, Finkers R, Gruden K, Junker A, King GJ, Krajewski P, Lange M, Laporte MA, Michotey C, Oppermann M, Ostler R, Poorter H, Ramı Rez-Gonzalez R, Ramšak Ž, Reif JC, Rocca-Serra P, Sansone SA, Scholz U, Tardieu F, Uauy C, Usadel B, Visser RGF, Weise S, Kersey PJ, Miguel CM, Adam-Blondon AF, Pommier C. Papoutsoglou EA, et al. Among authors: usadel b. New Phytol. 2020 Jul;227(1):260-273. doi: 10.1111/nph.16544. Epub 2020 Apr 25. New Phytol. 2020. PMID: 32171029 Free PMC article.
Plant genome sequencing - applications for crop improvement.
Bolger ME, Weisshaar B, Scholz U, Stein N, Usadel B, Mayer KF. Bolger ME, et al. Among authors: usadel b. Curr Opin Biotechnol. 2014 Apr;26:31-7. doi: 10.1016/j.copbio.2013.08.019. Epub 2013 Sep 21. Curr Opin Biotechnol. 2014. PMID: 24679255 Review.
Towards recommendations for metadata and data handling in plant phenotyping.
Krajewski P, Chen D, Ćwiek H, van Dijk AD, Fiorani F, Kersey P, Klukas C, Lange M, Markiewicz A, Nap JP, van Oeveren J, Pommier C, Scholz U, van Schriek M, Usadel B, Weise S. Krajewski P, et al. Among authors: usadel b. J Exp Bot. 2015 Sep;66(18):5417-27. doi: 10.1093/jxb/erv271. Epub 2015 Jun 4. J Exp Bot. 2015. PMID: 26044092
Genetic architecture of plant stress resistance: multi-trait genome-wide association mapping.
Thoen MP, Davila Olivas NH, Kloth KJ, Coolen S, Huang PP, Aarts MG, Bac-Molenaar JA, Bakker J, Bouwmeester HJ, Broekgaarden C, Bucher J, Busscher-Lange J, Cheng X, Fradin EF, Jongsma MA, Julkowska MM, Keurentjes JJ, Ligterink W, Pieterse CM, Ruyter-Spira C, Smant G, Testerink C, Usadel B, van Loon JJ, van Pelt JA, van Schaik CC, van Wees SC, Visser RG, Voorrips R, Vosman B, Vreugdenhil D, Warmerdam S, Wiegers GL, van Heerwaarden J, Kruijer W, van Eeuwijk FA, Dicke M. Thoen MP, et al. Among authors: usadel b. New Phytol. 2017 Feb;213(3):1346-1362. doi: 10.1111/nph.14220. Epub 2016 Oct 4. New Phytol. 2017. PMID: 27699793 Free PMC article.
Measures for interoperability of phenotypic data: minimum information requirements and formatting.
Ćwiek-Kupczyńska H, Altmann T, Arend D, Arnaud E, Chen D, Cornut G, Fiorani F, Frohmberg W, Junker A, Klukas C, Lange M, Mazurek C, Nafissi A, Neveu P, van Oeveren J, Pommier C, Poorter H, Rocca-Serra P, Sansone SA, Scholz U, van Schriek M, Seren Ü, Usadel B, Weise S, Kersey P, Krajewski P. Ćwiek-Kupczyńska H, et al. Among authors: usadel b. Plant Methods. 2016 Nov 9;12:44. doi: 10.1186/s13007-016-0144-4. eCollection 2016. Plant Methods. 2016. PMID: 27843484 Free PMC article.
From plant genomes to phenotypes.
Bolger M, Schwacke R, Gundlach H, Schmutzer T, Chen J, Arend D, Oppermann M, Weise S, Lange M, Fiorani F, Spannagl M, Scholz U, Mayer K, Usadel B. Bolger M, et al. Among authors: usadel b. J Biotechnol. 2017 Nov 10;261:46-52. doi: 10.1016/j.jbiotec.2017.06.003. Epub 2017 Jun 9. J Biotechnol. 2017. PMID: 28602791 Free article. Review.
Corrigendum: Towards recommendations for metadata and data handling in plant phenotyping.
Krajewski P, Chen D, Cwiek H, van Dijk ADJ, Fiorani F, Kersey P, Klukas C, Lange M, Markiewicz A, Nap JP, van Oeveren J, Pommier C, Scholz U, van Schriek M, Usadel B, Weise S. Krajewski P, et al. Among authors: usadel b. J Exp Bot. 2018 Mar 24;69(7):1819. doi: 10.1093/jxb/ery006. J Exp Bot. 2018. PMID: 29471492 No abstract available.
Computational aspects underlying genome to phenome analysis in plants.
Bolger AM, Poorter H, Dumschott K, Bolger ME, Arend D, Osorio S, Gundlach H, Mayer KFX, Lange M, Scholz U, Usadel B. Bolger AM, et al. Among authors: usadel b. Plant J. 2019 Jan;97(1):182-198. doi: 10.1111/tpj.14179. Plant J. 2019. PMID: 30500991 Free PMC article. Review.
186 results