Umarov R - Search Results

1

Genomic and Cytogenetic Analysis of Synthetic Polyploids between Diploid and Tetraploid Cotton (Gossypium) Species.

Khidirov MT, Ernazarova DK, Rafieva FU, Ernazarova ZA, Toshpulatov AK, Umarov RF, Kholova MD, Oripova BB, Kudratova MK, Gapparov BM, Khidirova MM, Komilov DJ, Turaev OS, Udall JA, Yu JZ, Kushanov FN. Khidirov MT, et al. Among authors: umarov rf. Plants (Basel). 2023 Dec 17;12(24):4184. doi: 10.3390/plants12244184. Plants (Basel). 2023. PMID: 38140511 Free PMC article.

2

Enhancer target prediction: state-of-the-art approaches and future prospects.

Umarov R, Hon CC. Umarov R, et al. Biochem Soc Trans. 2023 Oct 31;51(5):1975-1988. doi: 10.1042/BST20230917. Biochem Soc Trans. 2023. PMID: 37830459 Review.

3

DeepCellState: An autoencoder-based framework for predicting cell type specific transcriptional states induced by drug treatment.

Umarov R, Li Y, Arner E. Umarov R, et al. PLoS Comput Biol. 2021 Oct 5;17(10):e1009465. doi: 10.1371/journal.pcbi.1009465. eCollection 2021 Oct. PLoS Comput Biol. 2021. PMID: 34610009 Free PMC article.

4

ReFeaFi: Genome-wide prediction of regulatory elements driving transcription initiation.

Umarov R, Li Y, Arakawa T, Takizawa S, Gao X, Arner E. Umarov R, et al. PLoS Comput Biol. 2021 Sep 7;17(9):e1009376. doi: 10.1371/journal.pcbi.1009376. eCollection 2021 Sep. PLoS Comput Biol. 2021. PMID: 34491989 Free PMC article.

5

HMD-ARG: hierarchical multi-task deep learning for annotating antibiotic resistance genes.

Li Y, Xu Z, Han W, Cao H, Umarov R, Yan A, Fan M, Chen H, Duarte CM, Li L, Ho PL, Gao X. Li Y, et al. Among authors: umarov r. Microbiome. 2021 Feb 8;9(1):40. doi: 10.1186/s40168-021-01002-3. Microbiome. 2021. PMID: 33557954 Free PMC article.

6

Analysis of transcript-deleterious variants in Mendelian disorders: implications for RNA-based diagnostics.

Maddirevula S, Kuwahara H, Ewida N, Shamseldin HE, Patel N, Alzahrani F, AlSheddi T, AlObeid E, Alenazi M, Alsaif HS, Alqahtani M, AlAli M, Al Ali H, Helaby R, Ibrahim N, Abdulwahab F, Hashem M, Hanna N, Monies D, Derar N, Alsagheir A, Alhashem A, Alsaleem B, Alhebbi H, Wali S, Umarov R, Gao X, Alkuraya FS. Maddirevula S, et al. Among authors: umarov r. Genome Biol. 2020 Jun 17;21(1):145. doi: 10.1186/s13059-020-02053-9. Genome Biol. 2020. PMID: 32552793 Free PMC article. Clinical Trial.

7

A deep learning framework to predict binding preference of RNA constituents on protein surface.

Lam JH, Li Y, Zhu L, Umarov R, Jiang H, Héliou A, Sheong FK, Liu T, Long Y, Li Y, Fang L, Altman RB, Chen W, Huang X, Gao X. Lam JH, et al. Among authors: umarov r. Nat Commun. 2019 Oct 30;10(1):4941. doi: 10.1038/s41467-019-12920-0. Nat Commun. 2019. PMID: 31666519 Free PMC article.

8

Promoter analysis and prediction in the human genome using sequence-based deep learning models.

Umarov R, Kuwahara H, Li Y, Gao X, Solovyev V. Umarov R, et al. Bioinformatics. 2019 Aug 15;35(16):2730-2737. doi: 10.1093/bioinformatics/bty1068. Bioinformatics. 2019. PMID: 30601980

9

Increase in Strength and Fretting Resistance of Alloy 718 Using the Surface Modification Process.

Amanov A, Umarov R, Amanov T. Amanov A, et al. Among authors: umarov r. Materials (Basel). 2018 Aug 6;11(8):1366. doi: 10.3390/ma11081366. Materials (Basel). 2018. PMID: 30082672 Free PMC article.

10

DEEPre: sequence-based enzyme EC number prediction by deep learning.

Li Y, Wang S, Umarov R, Xie B, Fan M, Li L, Gao X. Li Y, et al. Among authors: umarov r. Bioinformatics. 2018 Mar 1;34(5):760-769. doi: 10.1093/bioinformatics/btx680. Bioinformatics. 2018. PMID: 29069344 Free PMC article.

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