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A spatial human thymus cell atlas mapped to a continuous tissue axis.
Yayon N, Kedlian VR, Boehme L, Suo C, Wachter B, Beuschel RT, Amsalem O, Polanski K, Koplev S, Tuck E, Dann E, Van Hulle J, Perera S, Putteman T, Predeus AV, Dabrowska M, Richardson L, Tudor C, Kreins AY, Engelbert J, Stephenson E, Kleshchevnikov V, De Rita F, Crossland D, Bosticardo M, Pala F, Prigmore E, Chipampe NJ, Prete M, Fei L, To K, Barker RA, He X, Van Nieuwerburgh F, Bayraktar O, Patel M, Davies GE, Haniffa MA, Uhlmann V, Notarangelo LD, Germain RN, Radtke AJ, Marioni JC, Taghon T, Teichmann SA. Yayon N, et al. Among authors: uhlmann v. bioRxiv [Preprint]. 2023 Oct 27:2023.10.25.562925. doi: 10.1101/2023.10.25.562925. bioRxiv. 2023. PMID: 37986877 Free PMC article. Preprint.
Simulating structurally variable nuclear pore complexes for microscopy.
Theiss M, Hériché JK, Russell C, Helekal D, Soppitt A, Ries J, Ellenberg J, Brazma A, Uhlmann V. Theiss M, et al. Among authors: uhlmann v. Bioinformatics. 2023 Oct 3;39(10):btad587. doi: 10.1093/bioinformatics/btad587. Bioinformatics. 2023. PMID: 37756700 Free PMC article.
Embryo-uterine interaction coordinates mouse embryogenesis during implantation.
Bondarenko V, Nikolaev M, Kromm D, Belousov R, Wolny A, Blotenburg M, Zeller P, Rezakhani S, Hugger J, Uhlmann V, Hufnagel L, Kreshuk A, Ellenberg J, van Oudenaarden A, Erzberger A, Lutolf MP, Hiiragi T. Bondarenko V, et al. Among authors: uhlmann v. EMBO J. 2023 Sep 4;42(17):e113280. doi: 10.15252/embj.2022113280. Epub 2023 Jul 31. EMBO J. 2023. PMID: 37522872 Free PMC article.
A biologist's guide to planning and performing quantitative bioimaging experiments.
Senft RA, Diaz-Rohrer B, Colarusso P, Swift L, Jamali N, Jambor H, Pengo T, Brideau C, Llopis PM, Uhlmann V, Kirk J, Gonzales KA, Bankhead P, Evans EL 3rd, Eliceiri KW, Cimini BA. Senft RA, et al. Among authors: uhlmann v. PLoS Biol. 2023 Jun 27;21(6):e3002167. doi: 10.1371/journal.pbio.3002167. eCollection 2023 Jun. PLoS Biol. 2023. PMID: 37368874 Free PMC article.
Deep learning for bioimage analysis in developmental biology.
Hallou A, Yevick HG, Dumitrascu B, Uhlmann V. Hallou A, et al. Among authors: uhlmann v. Development. 2021 Sep 15;148(18):dev199616. doi: 10.1242/dev.199616. Epub 2021 Sep 7. Development. 2021. PMID: 34490888 Free PMC article. Review.
REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology.
Sarkans U, Chiu W, Collinson L, Darrow MC, Ellenberg J, Grunwald D, Hériché JK, Iudin A, Martins GG, Meehan T, Narayan K, Patwardhan A, Russell MRG, Saibil HR, Strambio-De-Castillia C, Swedlow JR, Tischer C, Uhlmann V, Verkade P, Barlow M, Bayraktar O, Birney E, Catavitello C, Cawthorne C, Wagner-Conrad S, Duke E, Paul-Gilloteaux P, Gustin E, Harkiolaki M, Kankaanpää P, Lemberger T, McEntyre J, Moore J, Nicholls AW, Onami S, Parkinson H, Parsons M, Romanchikova M, Sofroniew N, Swoger J, Utz N, Voortman LM, Wong F, Zhang P, Kleywegt GJ, Brazma A. Sarkans U, et al. Among authors: uhlmann v. Nat Methods. 2021 Dec;18(12):1418-1422. doi: 10.1038/s41592-021-01166-8. Nat Methods. 2021. PMID: 34021280 Free PMC article.
39 results