Tyakht AV - Search Results

1

Pentad: a tool for distance-dependent analysis of Hi-C interactions within and between chromatin compartments.

Magnitov MD, Garaev AK, Tyakht AV, Ulianov SV, Razin SV. Magnitov MD, et al. Among authors: tyakht av. BMC Bioinformatics. 2022 Apr 2;23(1):116. doi: 10.1186/s12859-022-04654-6. BMC Bioinformatics. 2022. PMID: 35366792 Free PMC article.

2

Benchmark of software tools for prokaryotic chromosomal interaction domain identification.

Magnitov MD, Kuznetsova VS, Ulianov SV, Razin SV, Tyakht AV. Magnitov MD, et al. Among authors: tyakht av. Bioinformatics. 2020 Nov 1;36(17):4560-4567. doi: 10.1093/bioinformatics/btaa555. Bioinformatics. 2020. PMID: 32492116 Free PMC article.

3

Suppression of liquid-liquid phase separation by 1,6-hexanediol partially compromises the 3D genome organization in living cells.

Ulianov SV, Velichko AK, Magnitov MD, Luzhin AV, Golov AK, Ovsyannikova N, Kireev II, Gavrikov AS, Mishin AS, Garaev AK, Tyakht AV, Gavrilov AA, Kantidze OL, Razin SV. Ulianov SV, et al. Among authors: tyakht av. Nucleic Acids Res. 2021 Oct 11;49(18):10524-10541. doi: 10.1093/nar/gkab249. Nucleic Acids Res. 2021. PMID: 33836078 Free PMC article.

4

Hi-C Metagenomics in the ICU: Exploring Clinically Relevant Features of Gut Microbiome in Chronically Critically Ill Patients.

Ivanova V, Chernevskaya E, Vasiluev P, Ivanov A, Tolstoganov I, Shafranskaya D, Ulyantsev V, Korobeynikov A, Razin SV, Beloborodova N, Ulianov SV, Tyakht A. Ivanova V, et al. Front Microbiol. 2022 Feb 3;12:770323. doi: 10.3389/fmicb.2021.770323. eCollection 2021. Front Microbiol. 2022. PMID: 35185811 Free PMC article.

5

RNA-DNA interactomes of three prokaryotes uncovered by proximity ligation.

Gavrilov AA, Evko GS, Galitsyna AA, Ulianov SV, Kochetkova TV, Merkel AY, Tyakht AV, Razin SV. Gavrilov AA, et al. Among authors: tyakht av. Commun Biol. 2023 Apr 29;6(1):473. doi: 10.1038/s42003-023-04853-8. Commun Biol. 2023. PMID: 37120653 Free PMC article.

6

Unraveling the Polysaccharide Biosynthesis Potential of Ganoderma lucidum: A Chromosome-Level Assembly Using Hi-C Sequencing.

Sonets IV, Dovidchenko NV, Ulianov SV, Yarina MS, Koshechkin SI, Razin SV, Krasnopolskaya LM, Tyakht AV. Sonets IV, et al. Among authors: tyakht av. J Fungi (Basel). 2023 Oct 16;9(10):1020. doi: 10.3390/jof9101020. J Fungi (Basel). 2023. PMID: 37888276 Free PMC article.

7

Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis.

Dubinkina VB, Ischenko DS, Ulyantsev VI, Tyakht AV, Alexeev DG. Dubinkina VB, et al. Among authors: tyakht av. BMC Bioinformatics. 2016 Jan 16;17:38. doi: 10.1186/s12859-015-0875-7. BMC Bioinformatics. 2016. PMID: 26774270 Free PMC article.

8

MetaFast: fast reference-free graph-based comparison of shotgun metagenomic data.

Ulyantsev VI, Kazakov SV, Dubinkina VB, Tyakht AV, Alexeev DG. Ulyantsev VI, et al. Among authors: tyakht av. Bioinformatics. 2016 Sep 15;32(18):2760-7. doi: 10.1093/bioinformatics/btw312. Epub 2016 Jun 3. Bioinformatics. 2016. PMID: 27259541

9

Genetic diversity of Escherichia coli in gut microbiota of patients with Crohn's disease discovered using metagenomic and genomic analyses.

Tyakht AV, Manolov AI, Kanygina AV, Ischenko DS, Kovarsky BA, Popenko AS, Pavlenko AV, Elizarova AV, Rakitina DV, Baikova JP, Ladygina VG, Kostryukova ES, Karpova IY, Semashko TA, Larin AK, Grigoryeva TV, Sinyagina MN, Malanin SY, Shcherbakov PL, Kharitonova AY, Khalif IL, Shapina MV, Maev IV, Andreev DN, Belousova EA, Buzunova YM, Alexeev DG, Govorun VM. Tyakht AV, et al. BMC Genomics. 2018 Dec 27;19(1):968. doi: 10.1186/s12864-018-5306-5. BMC Genomics. 2018. PMID: 30587114 Free PMC article.

10

MetaCherchant: analyzing genomic context of antibiotic resistance genes in gut microbiota.

Olekhnovich EI, Vasilyev AT, Ulyantsev VI, Kostryukova ES, Tyakht AV. Olekhnovich EI, et al. Among authors: tyakht av. Bioinformatics. 2018 Feb 1;34(3):434-444. doi: 10.1093/bioinformatics/btx681. Bioinformatics. 2018. PMID: 29092015

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