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Opportunities and obstacles for deep learning in biology and medicine.
Ching T, Himmelstein DS, Beaulieu-Jones BK, Kalinin AA, Do BT, Way GP, Ferrero E, Agapow PM, Zietz M, Hoffman MM, Xie W, Rosen GL, Lengerich BJ, Israeli J, Lanchantin J, Woloszynek S, Carpenter AE, Shrikumar A, Xu J, Cofer EM, Lavender CA, Turaga SC, Alexandari AM, Lu Z, Harris DJ, DeCaprio D, Qi Y, Kundaje A, Peng Y, Wiley LK, Segler MHS, Boca SM, Swamidass SJ, Huang A, Gitter A, Greene CS. Ching T, et al. Among authors: turaga sc. J R Soc Interface. 2018 Apr;15(141):20170387. doi: 10.1098/rsif.2017.0387. J R Soc Interface. 2018. PMID: 29618526 Free PMC article. Review.
Community-based benchmarking improves spike rate inference from two-photon calcium imaging data.
Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P, Gerhard S, Friedrich RW, Friedrich J, Paninski L, Pachitariu M, Harris KD, Bolte B, Machado TA, Ringach D, Stone J, Rogerson LE, Sofroniew NJ, Reimer J, Froudarakis E, Euler T, Román Rosón M, Theis L, Tolias AS, Bethge M. Berens P, et al. Among authors: turaga sc. PLoS Comput Biol. 2018 May 21;14(5):e1006157. doi: 10.1371/journal.pcbi.1006157. eCollection 2018 May. PLoS Comput Biol. 2018. PMID: 29782491 Free PMC article.
Automatic detection of synaptic partners in a whole-brain Drosophila electron microscopy data set.
Buhmann J, Sheridan A, Malin-Mayor C, Schlegel P, Gerhard S, Kazimiers T, Krause R, Nguyen TM, Heinrich L, Lee WA, Wilson R, Saalfeld S, Jefferis GSXE, Bock DD, Turaga SC, Cook M, Funke J. Buhmann J, et al. Among authors: turaga sc. Nat Methods. 2021 Jul;18(7):771-774. doi: 10.1038/s41592-021-01183-7. Epub 2021 Jun 24. Nat Methods. 2021. PMID: 34168373 Free PMC article.
Space-time wiring specificity supports direction selectivity in the retina.
Kim JS, Greene MJ, Zlateski A, Lee K, Richardson M, Turaga SC, Purcaro M, Balkam M, Robinson A, Behabadi BF, Campos M, Denk W, Seung HS; EyeWirers. Kim JS, et al. Among authors: turaga sc. Nature. 2014 May 15;509(7500):331-336. doi: 10.1038/nature13240. Epub 2014 May 4. Nature. 2014. PMID: 24805243 Free PMC article.
16 results