Tsunoda T - Search Results

1

Predicting protein-peptide binding sites with a deep convolutional neural network.

Wardah W, Dehzangi A, Taherzadeh G, Rashid MA, Khan MGM, Tsunoda T, Sharma A. Wardah W, et al. Among authors: tsunoda t. J Theor Biol. 2020 Jul 7;496:110278. doi: 10.1016/j.jtbi.2020.110278. Epub 2020 Apr 13. J Theor Biol. 2020. PMID: 32298689

2

Predict Gram-Positive and Gram-Negative Subcellular Localization via Incorporating Evolutionary Information and Physicochemical Features Into Chou's General PseAAC.

Sharma R, Dehzangi A, Lyons J, Paliwal K, Tsunoda T, Sharma A. Sharma R, et al. Among authors: tsunoda t. IEEE Trans Nanobioscience. 2015 Dec;14(8):915-26. doi: 10.1109/TNB.2015.2500186. Epub 2015 Nov 12. IEEE Trans Nanobioscience. 2015. PMID: 26584499

3

Protein fold recognition using HMM-HMM alignment and dynamic programming.

Lyons J, Paliwal KK, Dehzangi A, Heffernan R, Tsunoda T, Sharma A. Lyons J, et al. Among authors: tsunoda t. J Theor Biol. 2016 Mar 21;393:67-74. doi: 10.1016/j.jtbi.2015.12.018. Epub 2016 Jan 19. J Theor Biol. 2016. PMID: 26801876

4

Stepwise iterative maximum likelihood clustering approach.

Sharma A, Shigemizu D, Boroevich KA, López Y, Kamatani Y, Kubo M, Tsunoda T. Sharma A, et al. Among authors: tsunoda t. BMC Bioinformatics. 2016 Aug 24;17(1):319. doi: 10.1186/s12859-016-1184-5. BMC Bioinformatics. 2016. PMID: 27553625 Free PMC article.

5

Gene masking - a technique to improve accuracy for cancer classification with high dimensionality in microarray data.

Saini H, Lal SP, Naidu VV, Pickering VW, Singh G, Tsunoda T, Sharma A. Saini H, et al. Among authors: tsunoda t. BMC Med Genomics. 2016 Dec 5;9(Suppl 3):74. doi: 10.1186/s12920-016-0233-2. BMC Med Genomics. 2016. PMID: 28117659 Free PMC article.

6

Predicting MoRFs in protein sequences using HMM profiles.

Sharma R, Kumar S, Tsunoda T, Patil A, Sharma A. Sharma R, et al. Among authors: tsunoda t. BMC Bioinformatics. 2016 Dec 22;17(Suppl 19):504. doi: 10.1186/s12859-016-1375-0. BMC Bioinformatics. 2016. PMID: 28155710 Free PMC article.

7

SucStruct: Prediction of succinylated lysine residues by using structural properties of amino acids.

López Y, Dehzangi A, Lal SP, Taherzadeh G, Michaelson J, Sattar A, Tsunoda T, Sharma A. López Y, et al. Among authors: tsunoda t. Anal Biochem. 2017 Jun 15;527:24-32. doi: 10.1016/j.ab.2017.03.021. Epub 2017 Mar 28. Anal Biochem. 2017. PMID: 28363440

8

PSSM-Suc: Accurately predicting succinylation using position specific scoring matrix into bigram for feature extraction.

Dehzangi A, López Y, Lal SP, Taherzadeh G, Michaelson J, Sattar A, Tsunoda T, Sharma A. Dehzangi A, et al. Among authors: tsunoda t. J Theor Biol. 2017 Jul 21;425:97-102. doi: 10.1016/j.jtbi.2017.05.005. Epub 2017 May 5. J Theor Biol. 2017. PMID: 28483566

9

MoRFPred-plus: Computational Identification of MoRFs in Protein Sequences using Physicochemical Properties and HMM profiles.

Sharma R, Bayarjargal M, Tsunoda T, Patil A, Sharma A. Sharma R, et al. Among authors: tsunoda t. J Theor Biol. 2018 Jan 21;437:9-16. doi: 10.1016/j.jtbi.2017.10.015. Epub 2017 Oct 16. J Theor Biol. 2018. PMID: 29042212 Free article.

10

Divisive hierarchical maximum likelihood clustering.

Sharma A, López Y, Tsunoda T. Sharma A, et al. Among authors: tsunoda t. BMC Bioinformatics. 2017 Dec 28;18(Suppl 16):546. doi: 10.1186/s12859-017-1965-5. BMC Bioinformatics. 2017. PMID: 29297297 Free PMC article.

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