Tseng E - Search Results

1

Transcriptional fates of human-specific segmental duplications in brain.

Dougherty ML, Underwood JG, Nelson BJ, Tseng E, Munson KM, Penn O, Nowakowski TJ, Pollen AA, Eichler EE. Dougherty ML, et al. Among authors: tseng e. Genome Res. 2018 Oct;28(10):1566-1576. doi: 10.1101/gr.237610.118. Epub 2018 Sep 18. Genome Res. 2018. PMID: 30228200 Free PMC article.

2

Long-read sequencing of chicken transcripts and identification of new transcript isoforms.

Thomas S, Underwood JG, Tseng E, Holloway AK; Bench To Basinet CvDC Informatics Subcommittee. Thomas S, et al. Among authors: tseng e. PLoS One. 2014 Apr 15;9(4):e94650. doi: 10.1371/journal.pone.0094650. eCollection 2014. PLoS One. 2014. PMID: 24736250 Free PMC article.

3

Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing.

Weirather JL, Afshar PT, Clark TA, Tseng E, Powers LS, Underwood JG, Zabner J, Korlach J, Wong WH, Au KF. Weirather JL, et al. Among authors: tseng e. Nucleic Acids Res. 2015 Oct 15;43(18):e116. doi: 10.1093/nar/gkv562. Epub 2015 Jun 3. Nucleic Acids Res. 2015. PMID: 26040699 Free PMC article.

4

Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing.

Gordon SP, Tseng E, Salamov A, Zhang J, Meng X, Zhao Z, Kang D, Underwood J, Grigoriev IV, Figueroa M, Schilling JS, Chen F, Wang Z. Gordon SP, et al. Among authors: tseng e. PLoS One. 2015 Jul 15;10(7):e0132628. doi: 10.1371/journal.pone.0132628. eCollection 2015. PLoS One. 2015. PMID: 26177194 Free PMC article.

5

Full-length mRNA sequencing uncovers a widespread coupling between transcription initiation and mRNA processing.

Anvar SY, Allard G, Tseng E, Sheynkman GM, de Klerk E, Vermaat M, Yin RH, Johansson HE, Ariyurek Y, den Dunnen JT, Turner SW, 't Hoen PAC. Anvar SY, et al. Among authors: tseng e. Genome Biol. 2018 Mar 29;19(1):46. doi: 10.1186/s13059-018-1418-0. Genome Biol. 2018. PMID: 29598823 Free PMC article.

6

A comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing.

Wang B, Regulski M, Tseng E, Olson A, Goodwin S, McCombie WR, Ware D. Wang B, et al. Among authors: tseng e. Genome Res. 2018 Jun;28(6):921-932. doi: 10.1101/gr.227462.117. Epub 2018 Apr 30. Genome Res. 2018. PMID: 29712755 Free PMC article.

7

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line.

Nattestad M, Goodwin S, Ng K, Baslan T, Sedlazeck FJ, Rescheneder P, Garvin T, Fang H, Gurtowski J, Hutton E, Tseng E, Chin CS, Beck T, Sundaravadanam Y, Kramer M, Antoniou E, McPherson JD, Hicks J, McCombie WR, Schatz MC. Nattestad M, et al. Among authors: tseng e. Genome Res. 2018 Aug;28(8):1126-1135. doi: 10.1101/gr.231100.117. Epub 2018 Jun 28. Genome Res. 2018. PMID: 29954844 Free PMC article.

8

ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms.

Sheynkman GM, Tuttle KS, Laval F, Tseng E, Underwood JG, Yu L, Dong D, Smith ML, Sebra R, Willems L, Hao T, Calderwood MA, Hill DE, Vidal M. Sheynkman GM, et al. Among authors: tseng e. Nat Commun. 2020 May 11;11(1):2326. doi: 10.1038/s41467-020-16174-z. Nat Commun. 2020. PMID: 32393825 Free PMC article.

9

Long-read isoform sequencing reveals tissue-specific isoform expression between active and hibernating brown bears (Ursus arctos).

Tseng E, Underwood JG, Evans Hutzenbiler BD, Trojahn S, Kingham B, Shevchenko O, Bernberg E, Vierra M, Robbins CT, Jansen HT, Kelley JL. Tseng E, et al. G3 (Bethesda). 2022 Mar 4;12(3):jkab422. doi: 10.1093/g3journal/jkab422. G3 (Bethesda). 2022. PMID: 35100340 Free PMC article.

10

Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing.

Wang B, Tseng E, Regulski M, Clark TA, Hon T, Jiao Y, Lu Z, Olson A, Stein JC, Ware D. Wang B, et al. Among authors: tseng e. Nat Commun. 2016 Jun 24;7:11708. doi: 10.1038/ncomms11708. Nat Commun. 2016. PMID: 27339440 Free PMC article.

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