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Genome-Wide Prediction of Transcription Start Sites in Conifers.
Int J Mol Sci. 2022 Feb 3;23(3):1735. doi: 10.3390/ijms23031735.
Int J Mol Sci. 2022.
PMID: 35163661
Free PMC article.
Skew in CG content near the transcription start site in Arabidopsis thaliana.
Tatarinova T, Brover V, Troukhan M, Alexandrov N.
Tatarinova T, et al.
Bioinformatics. 2003;19 Suppl 1:i313-4. doi: 10.1093/bioinformatics/btg1043.
Bioinformatics. 2003.
PMID: 12855475
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Features of Arabidopsis genes and genome discovered using full-length cDNAs.
Alexandrov NN, Troukhan ME, Brover VV, Tatarinova T, Flavell RB, Feldmann KA.
Alexandrov NN, et al. Among authors: troukhan me.
Plant Mol Biol. 2006 Jan;60(1):69-85. doi: 10.1007/s11103-005-2564-9.
Plant Mol Biol. 2006.
PMID: 16463100
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Insights into corn genes derived from large-scale cDNA sequencing.
Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, Zhang H, Swaller TJ, Lu YP, Bouck J, Flavell RB, Feldmann KA.
Alexandrov NN, et al. Among authors: troukhan me.
Plant Mol Biol. 2009 Jan;69(1-2):179-94. doi: 10.1007/s11103-008-9415-4. Epub 2008 Oct 21.
Plant Mol Biol. 2009.
PMID: 18937034
Free PMC article.
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Genome-wide discovery of cis-elements in promoter sequences using gene expression.
Troukhan M, Tatarinova T, Bouck J, Flavell RB, Alexandrov NN.
Troukhan M, et al.
OMICS. 2009 Apr;13(2):139-51. doi: 10.1089/omi.2008.0034.
OMICS. 2009.
PMID: 19231992
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Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice.
Zhou Y, Yu Z, Chebotarov D, Chougule K, Lu Z, Rivera LF, Kathiresan N, Al-Bader N, Mohammed N, Alsantely A, Mussurova S, Santos J, Thimma M, Troukhan M, Fornasiero A, Green CD, Copetti D, Kudrna D, Llaca V, Lorieux M, Zuccolo A, Ware D, McNally K, Zhang J, Wing RA.
Zhou Y, et al.
Nat Commun. 2023 Mar 21;14(1):1567. doi: 10.1038/s41467-023-37004-y.
Nat Commun. 2023.
PMID: 36944612
Free PMC article.
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Full-length messenger RNA sequences greatly improve genome annotation.
Haas BJ, Volfovsky N, Town CD, Troukhan M, Alexandrov N, Feldmann KA, Flavell RB, White O, Salzberg SL.
Haas BJ, et al.
Genome Biol. 2002;3(6):RESEARCH0029. doi: 10.1186/gb-2002-3-6-research0029. Epub 2002 May 30.
Genome Biol. 2002.
PMID: 12093376
Free PMC article.
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High resolution genetic mapping by genome sequencing reveals genome duplication and tetraploid genetic structure of the diploid Miscanthus sinensis.
Ma XF, Jensen E, Alexandrov N, Troukhan M, Zhang L, Thomas-Jones S, Farrar K, Clifton-Brown J, Donnison I, Swaller T, Flavell R.
Ma XF, et al.
PLoS One. 2012;7(3):e33821. doi: 10.1371/journal.pone.0033821. Epub 2012 Mar 16.
PLoS One. 2012.
PMID: 22439001
Free PMC article.
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