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Page 1
Addressing persistent challenges in digital image analysis of cancerous tissues.
Prabhakaran S, Yapp C, Baker GJ, Beyer J, Chang YH, Creason AL, Krueger R, Muhlich J, Patterson NH, Sidak K, Sudar D, Taylor AJ, Ternes L, Troidl J, Xie Y, Sokolov A, Tyson DR; Cell Imaging Hackathon 2022 Participants. Prabhakaran S, et al. Among authors: troidl j. bioRxiv [Preprint]. 2023 Jul 24:2023.07.21.548450. doi: 10.1101/2023.07.21.548450. bioRxiv. 2023. PMID: 37547011 Free PMC article. Preprint.
Vimo - Visual Analysis of Neuronal Connectivity Motifs.
Troidl J, Warchol S, Choi J, Matelsky J, Dhanyasi N, Wang X, Wester B, Wei D, Lichtman JW, Pfister H, Beyer J. Troidl J, et al. IEEE Trans Vis Comput Graph. 2023 Oct 26;PP:10.1109/TVCG.2023.3327388. doi: 10.1109/TVCG.2023.3327388. Online ahead of print. IEEE Trans Vis Comput Graph. 2023. PMID: 37883279
CAVE: Connectome Annotation Versioning Engine.
Dorkenwald S, Schneider-Mizell CM, Brittain D, Halageri A, Jordan C, Kemnitz N, Castro MA, Silversmith W, Maitin-Shephard J, Troidl J, Pfister H, Gillet V, Xenes D, Bae JA, Bodor AL, Buchanan J, Bumbarger DJ, Elabbady L, Jia Z, Kapner D, Kinn S, Lee K, Li K, Lu R, Macrina T, Mahalingam G, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Takeno M, Torres R, Turner NL, Wong W, Wu J, Yin W, Yu SC, Reid RC, da Costa NM, Seung HS, Collman F. Dorkenwald S, et al. Among authors: troidl j. bioRxiv [Preprint]. 2023 Jul 28:2023.07.26.550598. doi: 10.1101/2023.07.26.550598. bioRxiv. 2023. PMID: 37546753 Free PMC article. Preprint.
Dense 4D nanoscale reconstruction of living brain tissue.
Velicky P, Miguel E, Michalska JM, Lyudchik J, Wei D, Lin Z, Watson JF, Troidl J, Beyer J, Ben-Simon Y, Sommer C, Jahr W, Cenameri A, Broichhagen J, Grant SGN, Jonas P, Novarino G, Pfister H, Bickel B, Danzl JG. Velicky P, et al. Among authors: troidl j. Nat Methods. 2023 Aug;20(8):1256-1265. doi: 10.1038/s41592-023-01936-6. Epub 2023 Jul 10. Nat Methods. 2023. PMID: 37429995 Free PMC article.
A petavoxel fragment of human cerebral cortex reconstructed at nanoscale resolution.
Shapson-Coe A, Januszewski M, Berger DR, Pope A, Wu Y, Blakely T, Schalek RL, Li PH, Wang S, Maitin-Shepard J, Karlupia N, Dorkenwald S, Sjostedt E, Leavitt L, Lee D, Troidl J, Collman F, Bailey L, Fitzmaurice A, Kar R, Field B, Wu H, Wagner-Carena J, Aley D, Lau J, Lin Z, Wei D, Pfister H, Peleg A, Jain V, Lichtman JW. Shapson-Coe A, et al. Among authors: troidl j. Science. 2024 May 10;384(6696):eadk4858. doi: 10.1126/science.adk4858. Epub 2024 May 10. Science. 2024. PMID: 38723085