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SIMILE enables alignment of tandem mass spectra with statistical significance.
Nat Commun. 2022 May 6;13(1):2510. doi: 10.1038/s41467-022-30118-9.
Nat Commun. 2022.
PMID: 35523965
Free PMC article.
Multilab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass.
Sasse J, Kant J, Cole BJ, Klein AP, Arsova B, Schlaepfer P, Gao J, Lewald K, Zhalnina K, Kosina S, Bowen BP, Treen D, Vogel J, Visel A, Watt M, Dangl JL, Northen TR.
Sasse J, et al.
New Phytol. 2019 Apr;222(2):1149-1160. doi: 10.1111/nph.15662. Epub 2019 Jan 24.
New Phytol. 2019.
PMID: 30585637
Free PMC article.
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Cooking shapes the structure and function of the gut microbiome.
Carmody RN, Bisanz JE, Bowen BP, Maurice CF, Lyalina S, Louie KB, Treen D, Chadaideh KS, Maini Rekdal V, Bess EN, Spanogiannopoulos P, Ang QY, Bauer KC, Balon TW, Pollard KS, Northen TR, Turnbaugh PJ.
Carmody RN, et al.
Nat Microbiol. 2019 Dec;4(12):2052-2063. doi: 10.1038/s41564-019-0569-4. Epub 2019 Sep 30.
Nat Microbiol. 2019.
PMID: 31570867
Free PMC article.
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A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology.
Calhoun S, Bell TAS, Dahlin LR, Kunde Y, LaButti K, Louie KB, Kuftin A, Treen D, Dilworth D, Mihaltcheva S, Daum C, Bowen BP, Northen TR, Guarnieri MT, Starkenburg SR, Grigoriev IV.
Calhoun S, et al.
Commun Biol. 2021 Mar 12;4(1):333. doi: 10.1038/s42003-021-01859-y.
Commun Biol. 2021.
PMID: 33712730
Free PMC article.
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BLINK enables ultrafast tandem mass spectrometry cosine similarity scoring.
Harwood TV, Treen DGC, Wang M, de Jong W, Northen TR, Bowen BP.
Harwood TV, et al. Among authors: treen dgc.
Sci Rep. 2023 Aug 18;13(1):13462. doi: 10.1038/s41598-023-40496-9.
Sci Rep. 2023.
PMID: 37596301
Free PMC article.
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