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Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows.
Van Den Bossche T, Kunath BJ, Schallert K, Schäpe SS, Abraham PE, Armengaud J, Arntzen MØ, Bassignani A, Benndorf D, Fuchs S, Giannone RJ, Griffin TJ, Hagen LH, Halder R, Henry C, Hettich RL, Heyer R, Jagtap P, Jehmlich N, Jensen M, Juste C, Kleiner M, Langella O, Lehmann T, Leith E, May P, Mesuere B, Miotello G, Peters SL, Pible O, Queiros PT, Reichl U, Renard BY, Schiebenhoefer H, Sczyrba A, Tanca A, Trappe K, Trezzi JP, Uzzau S, Verschaffelt P, von Bergen M, Wilmes P, Wolf M, Martens L, Muth T. Van Den Bossche T, et al. Among authors: trappe k. Nat Commun. 2021 Dec 15;12(1):7305. doi: 10.1038/s41467-021-27542-8. Nat Commun. 2021. PMID: 34911965 Free PMC article.
[No title available]
[No authors listed] [No authors listed] PMID: 33451533
Systems-level Analysis Reveals Multiple Modulators of Epithelial-mesenchymal Transition and Identifies DNAJB4 and CD81 as Novel Metastasis Inducers in Breast Cancer.
Uretmen Kagiali ZC, Sanal E, Karayel Ö, Polat AN, Saatci Ö, Ersan PG, Trappe K, Renard BY, Önder TT, Tuncbag N, Şahin Ö, Ozlu N. Uretmen Kagiali ZC, et al. Among authors: trappe k. Mol Cell Proteomics. 2019 Sep;18(9):1756-1771. doi: 10.1074/mcp.RA119.001446. Epub 2019 Jun 20. Mol Cell Proteomics. 2019. PMID: 31221721 Free PMC article.
Somatic mutation profiles of MSI and MSS colorectal cancer identified by whole exome next generation sequencing and bioinformatics analysis.
Timmermann B, Kerick M, Roehr C, Fischer A, Isau M, Boerno ST, Wunderlich A, Barmeyer C, Seemann P, Koenig J, Lappe M, Kuss AW, Garshasbi M, Bertram L, Trappe K, Werber M, Herrmann BG, Zatloukal K, Lehrach H, Schweiger MR. Timmermann B, et al. Among authors: trappe k. PLoS One. 2010 Dec 22;5(12):e15661. doi: 10.1371/journal.pone.0015661. PLoS One. 2010. PMID: 21203531 Free PMC article.
Advancing Precision Vaccinology by Molecular and Genomic Surveillance of Severe Acute Respiratory Syndrome Coronavirus 2 in Germany, 2021.
Oh DY, Hölzer M, Paraskevopoulou S, Trofimova M, Hartkopf F, Budt M, Wedde M, Richard H, Haldemann B, Domaszewska T, Reiche J, Keeren K, Radonić A, Ramos Calderón JP, Smith MR, Brinkmann A, Trappe K, Drechsel O, Klaper K, Hein S, Hildt E, Haas W, Calvignac-Spencer S, Semmler T, Dürrwald R, Thürmer A, Drosten C, Fuchs S, Kröger S, von Kleist M, Wolff T; Integrated Molecular Surveillance for SARS-CoV-2 (IMS-SC2) Laboratory Network. Oh DY, et al. Among authors: trappe k. Clin Infect Dis. 2022 Aug 15;75(Suppl 1):S110-S120. doi: 10.1093/cid/ciac399. Clin Infect Dis. 2022. PMID: 35749674 Free PMC article.
Genome alignment with graph data structures: a comparison.
Kehr B, Trappe K, Holtgrewe M, Reinert K. Kehr B, et al. Among authors: trappe k. BMC Bioinformatics. 2014 Apr 9;15:99. doi: 10.1186/1471-2105-15-99. BMC Bioinformatics. 2014. PMID: 24712884 Free PMC article.
20 results