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Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease.
Phelan J, Gomez-Gonzalez PJ, Andreu N, Omae Y, Toyo-Oka L, Yanai H, Miyahara R, Nedsuwan S, de Sessions PF, Campino S, Sallah N, Parkhill J, Smittipat N, Palittapongarnpim P, Mushiroda T, Kubo M, Tokunaga K, Mahasirimongkol S, Hibberd ML, Clark TG. Phelan J, et al. Among authors: toyo oka l. Nat Commun. 2023 Feb 1;14(1):549. doi: 10.1038/s41467-023-36282-w. Nat Commun. 2023. PMID: 36725857 Free PMC article.
TogoVar: A comprehensive Japanese genetic variation database.
Mitsuhashi N, Toyo-Oka L, Katayama T, Kawashima M, Kawashima S, Miyazaki K, Takagi T. Mitsuhashi N, et al. Among authors: toyo oka l. Hum Genome Var. 2022 Dec 12;9(1):44. doi: 10.1038/s41439-022-00222-9. Hum Genome Var. 2022. PMID: 36509753 Free PMC article.
Haplotype-specific PCR for NAT2 diplotyping.
Wichukchinda N, Pakdee J, Kunhapan P, Imunchot W, Toyo-Oka L, Tokunaga K, Mahasirimongkol S. Wichukchinda N, et al. Among authors: toyo oka l. Hum Genome Var. 2020 May 11;7:13. doi: 10.1038/s41439-020-0101-7. eCollection 2020. Hum Genome Var. 2020. PMID: 32411379 Free PMC article.
An optimized genomic VCF workflow for precise identification of Mycobacterium tuberculosis cluster from cross-platform whole genome sequencing data.
Disratthakit A, Toyo-Oka L, Thawong P, Paiboonsiri P, Wichukjinda N, Ajawatanawong P, Thipkrua N, Suthum K, Palittapongarnpim P, Tokunaga K, Mahasirimongkol S. Disratthakit A, et al. Among authors: toyo oka l. Infect Genet Evol. 2020 Apr;79:104152. doi: 10.1016/j.meegid.2019.104152. Epub 2019 Dec 24. Infect Genet Evol. 2020. PMID: 31881359
Indo-Oceanic Mycobacterium tuberculosis strains from Thailand associated with higher mortality.
Smittipat N, Miyahara R, Juthayothin T, Billamas P, Dokladda K, Imsanguan W, Intralawan D, Rukseree K, Jaitrong S, Chaiyasirinroje B, Wongjai J, Disratthakit A, Chaiprasert A, Nedsuwan S, Mahasirimongkol S, Toyo-Oka L, Tokunaga K, Yamada N, Palittapongarnpim P, Yanai H. Smittipat N, et al. Among authors: toyo oka l. Int J Tuberc Lung Dis. 2019 Sep 1;23(9):972-979. doi: 10.5588/ijtld.18.0710. Int J Tuberc Lung Dis. 2019. PMID: 31615603
Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates.
Palittapongarnpim P, Ajawatanawong P, Viratyosin W, Smittipat N, Disratthakit A, Mahasirimongkol S, Yanai H, Yamada N, Nedsuwan S, Imasanguan W, Kantipong P, Chaiyasirinroje B, Wongyai J, Toyo-Oka L, Phelan J, Parkhill J, Clark TG, Hibberd ML, Ruengchai W, Palittapongarnpim P, Juthayothin T, Tongsima S, Tokunaga K. Palittapongarnpim P, et al. Among authors: toyo oka l. Sci Rep. 2018 Aug 2;8(1):11597. doi: 10.1038/s41598-018-29986-3. Sci Rep. 2018. PMID: 30072734 Free PMC article.
NAT2 ultra-slow acetylator and risk of anti-tuberculosis drug-induced liver injury: a genotype-based meta-analysis.
Suvichapanich S, Fukunaga K, Zahroh H, Mushiroda T, Mahasirimongkol S, Toyo-Oka L, Chaikledkaew U, Jittikoon J, Yuliwulandari R, Yanai H, Wattanapokayakit S, Tokunaga K. Suvichapanich S, et al. Among authors: toyo oka l. Pharmacogenet Genomics. 2018 Jul;28(7):167-176. doi: 10.1097/FPC.0000000000000339. Pharmacogenet Genomics. 2018. PMID: 29781872
Pathogen lineage-based genome-wide association study identified CD53 as susceptible locus in tuberculosis.
Omae Y, Toyo-Oka L, Yanai H, Nedsuwan S, Wattanapokayakit S, Satproedprai N, Smittipat N, Palittapongarnpim P, Sawanpanyalert P, Inunchot W, Pasomsub E, Wichukchinda N, Mushiroda T, Kubo M, Tokunaga K, Mahasirimongkol S. Omae Y, et al. Among authors: toyo oka l. J Hum Genet. 2017 Dec;62(12):1015-1022. doi: 10.1038/jhg.2017.82. Epub 2017 Sep 7. J Hum Genet. 2017. PMID: 28878339 Free PMC article.
16 results