Toosi H - Search Results

1

CopyVAE: a variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics.

Kurt S, Chen M, Toosi H, Chen X, Engblom C, Mold J, Hartman J, Lagergren J. Kurt S, et al. Among authors: toosi h. Bioinformatics. 2024 May 2;40(5):btae284. doi: 10.1093/bioinformatics/btae284. Bioinformatics. 2024. PMID: 38676578 Free PMC article.

2

Clonally heritable gene expression imparts a layer of diversity within cell types.

Mold JE, Weissman MH, Ratz M, Hagemann-Jensen M, Hård J, Eriksson CJ, Toosi H, Berghenstråhle J, Ziegenhain C, von Berlin L, Martin M, Blom K, Lagergren J, Lundeberg J, Sandberg R, Michaëlsson J, Frisén J. Mold JE, et al. Among authors: toosi h. Cell Syst. 2024 Feb 21;15(2):149-165.e10. doi: 10.1016/j.cels.2024.01.004. Epub 2024 Feb 9. Cell Syst. 2024. PMID: 38340731 Free article.

3

Spatial transcriptomics of B cell and T cell receptors reveals lymphocyte clonal dynamics.

Engblom C, Thrane K, Lin Q, Andersson A, Toosi H, Chen X, Steiner E, Lu C, Mantovani G, Hagemann-Jensen M, Saarenpää S, Jangard M, Saez-Rodriguez J, Michaëlsson J, Hartman J, Lagergren J, Mold JE, Lundeberg J, Frisén J. Engblom C, et al. Among authors: toosi h. Science. 2023 Dec 8;382(6675):eadf8486. doi: 10.1126/science.adf8486. Epub 2023 Dec 8. Science. 2023. PMID: 38060664

4

Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data.

Geras A, Darvish Shafighi S, Domżał K, Filipiuk I, Rączkowska A, Szymczak P, Toosi H, Kaczmarek L, Koperski Ł, Lagergren J, Nowis D, Szczurek E. Geras A, et al. Among authors: toosi h. Genome Biol. 2023 May 17;24(1):120. doi: 10.1186/s13059-023-02951-8. Genome Biol. 2023. PMID: 37198601 Free PMC article.

5

Reconstructing clonal tree for phylo-phenotypic characterization of cancer using single-cell transcriptomics.

Jun SH, Toosi H, Mold J, Engblom C, Chen X, O'Flanagan C, Hagemann-Jensen M, Sandberg R, Aparicio S, Hartman J, Roth A, Lagergren J. Jun SH, et al. Among authors: toosi h. Nat Commun. 2023 Feb 22;14(1):982. doi: 10.1038/s41467-023-36202-y. Nat Commun. 2023. PMID: 36813776 Free PMC article.

6

Seroprevalence of Hepatitis C Virus among Prisoners in Lakan Prison, North of Iran, Is There Still a Concern?

Mohtasham-Amiri Z, Rezvani SM, Ashoori F, Behboodi M, Toosi H, Jafari-Shakib R. Mohtasham-Amiri Z, et al. Among authors: toosi h. Arch Iran Med. 2021 Oct 1;24(10):765-770. doi: 10.34172/aim.2021.113. Arch Iran Med. 2021. PMID: 34816699 Free article.

7

BAMSE: Bayesian model selection for tumor phylogeny inference among multiple samples.

Toosi H, Moeini A, Hajirasouliha I. Toosi H, et al. BMC Bioinformatics. 2019 Jun 6;20(Suppl 11):282. doi: 10.1186/s12859-019-2824-3. BMC Bioinformatics. 2019. PMID: 31167637 Free PMC article.

8

Using LICHeE and BAMSE for Reconstructing Cancer Phylogenetic Trees.

Ricketts C, Popic V, Toosi H, Hajirasouliha I. Ricketts C, et al. Among authors: toosi h. Curr Protoc Bioinformatics. 2018 Jun;62(1):e49. doi: 10.1002/cpbi.49. Epub 2018 May 16. Curr Protoc Bioinformatics. 2018. PMID: 29927069 Free PMC article.

9

Optimal delineation of ambulatory holter ECG events via false-alarm bounded segmentation of a wavelet-based principal components analyzed decision statistic.

Homaeinezhad MR, Ghaffari A, Toosi HN, Tahmasebi M, Daevaeiha MM. Homaeinezhad MR, et al. Among authors: toosi hn. Cardiovasc Eng. 2010 Sep;10(3):136-56. doi: 10.1007/s10558-010-9103-2. Cardiovasc Eng. 2010. PMID: 20821349

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