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N-Glycoproteins Have a Major Role in MGL Binding to Colorectal Cancer Cell Lines: Associations with Overall Proteome Diversity.
Int J Mol Sci. 2020 Aug 1;21(15):5522. doi: 10.3390/ijms21155522.
Int J Mol Sci. 2020.
PMID: 32752259
Free PMC article.
Oxonium Ion Guided Analysis of Quantitative Proteomics Data Reveals Site-Specific O-Glycosylation of Anterior Gradient Protein 2 (AGR2).
Pirro M, Mohammed Y, de Ru AH, Janssen GMC, Tjokrodirijo RTN, Madunić K, Wuhrer M, van Veelen PA, Hensbergen PJ.
Pirro M, et al. Among authors: tjokrodirijo rtn.
Int J Mol Sci. 2021 May 20;22(10):5369. doi: 10.3390/ijms22105369.
Int J Mol Sci. 2021.
PMID: 34065225
Free PMC article.
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Fc gamma receptor IIIb binding of individual antibody proteoforms resolved by affinity chromatography-mass spectrometry.
Lippold S, Knaupp A, de Ru AH, Tjokrodirijo RTN, van Veelen PA, van Puijenbroek E, de Taeye SW, Reusch D, Vidarsson G, Wuhrer M, Schlothauer T, Falck D.
Lippold S, et al. Among authors: tjokrodirijo rtn.
MAbs. 2021 Jan-Dec;13(1):1982847. doi: 10.1080/19420862.2021.1982847.
MAbs. 2021.
PMID: 34674601
Free PMC article.
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Quantitative proteomics of small numbers of closely-related cells: Selection of the optimal method for a clinical setting.
van der Pan K, Kassem S, Khatri I, de Ru AH, Janssen GMC, Tjokrodirijo RTN, Al Makindji F, Stavrakaki E, de Jager AL, Naber BAE, de Laat IF, Louis A, van den Bossche WBL, Vogelezang LB, Balvers RK, Lamfers MLM, van Veelen PA, Orfao A, van Dongen JJM, Teodosio C, Díez P.
van der Pan K, et al. Among authors: tjokrodirijo rtn.
Front Med (Lausanne). 2022 Sep 27;9:997305. doi: 10.3389/fmed.2022.997305. eCollection 2022.
Front Med (Lausanne). 2022.
PMID: 36237552
Free PMC article.
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Complement is activated by elevated IgG3 hexameric platforms and deposits C4b onto distinct antibody domains.
Abendstein L, Dijkstra DJ, Tjokrodirijo RTN, van Veelen PA, Trouw LA, Hensbergen PJ, Sharp TH.
Abendstein L, et al. Among authors: tjokrodirijo rtn.
Nat Commun. 2023 Jul 7;14(1):4027. doi: 10.1038/s41467-023-39788-5.
Nat Commun. 2023.
PMID: 37419978
Free PMC article.
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A photoaffinity glycan-labeling approach to investigate immunoglobulin glycan-binding partners.
Holborough-Kerkvliet MD, Mucignato G, Moons SJ, Psomiadou V, Konada RSR, Pedowitz NJ, Pratt MR, Kissel T, Koeleman CAM, Tjokrodirijo RTN, van Veelen PA, Huizinga T, van Schie KAJ, Wuhrer M, Kohler JJ, Bonger KM, Boltje TJ, Toes REM.
Holborough-Kerkvliet MD, et al. Among authors: tjokrodirijo rtn.
Glycobiology. 2023 Oct 29;33(9):732-744. doi: 10.1093/glycob/cwad055.
Glycobiology. 2023.
PMID: 37498177
Free PMC article.
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Neoantigen Targetability in Progressive Advanced Melanoma.
van den Bulk J, Verdegaal EME, van der Ploeg M, Visser M, Nunes JB, de Ru AH, Tjokrodirijo RTN, Ijsselsteijn ME, Janssen NI, van der Breggen R, de Bruin L, de Kok P, Janssen GMC, Ruano D, Kapiteijn EHW, van Veelen PA, de Miranda NFCC, van der Burg SH.
van den Bulk J, et al. Among authors: tjokrodirijo rtn.
Clin Cancer Res. 2023 Oct 13;29(20):4278-4288. doi: 10.1158/1078-0432.CCR-23-1106.
Clin Cancer Res. 2023.
PMID: 37540567
Free PMC article.
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Cellular Validation of a Chemically Improved Inhibitor Identifies Monoubiquitination on OTUB2.
Gan J, de Vries J, Akkermans JJLL, Mohammed Y, Tjokrodirijo RTN, de Ru AH, Kim RQ, Vargas DA, Pol V, Fasan R, van Veelen PA, Neefjes J, van Dam H, Ovaa H, Sapmaz A, Geurink PP.
Gan J, et al. Among authors: tjokrodirijo rtn.
ACS Chem Biol. 2023 Sep 15;18(9):2003-2013. doi: 10.1021/acschembio.3c00227. Epub 2023 Aug 29.
ACS Chem Biol. 2023.
PMID: 37642399
Free PMC article.
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