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Towards accurate indel calling for oncopanel sequencing through an international pipeline competition at precisionFDA.
Gong B, Lababidi S, Kusko R, Bouri K, Prezek S, Thovarai V, Prasanna A, Maier EJ, Golkaram M, Sun X, Kyriakidis K, Kitajima JP, Ebrahim Sahraeian SM, Guo Y, Johanson E, Jones W, Tong W, Xu J. Gong B, et al. Among authors: thovarai v. Sci Rep. 2024 Apr 8;14(1):8165. doi: 10.1038/s41598-024-58573-y. Sci Rep. 2024. PMID: 38589653 Free PMC article.
Synthetic Health Data Can Augment Community Research Efforts to Better Inform the Public During Emerging Pandemics.
Prasanna A, Jing B, Plopper G, Miller KK, Sanjak J, Feng A, Prezek S, Vidyaprakash E, Thovarai V, Maier EJ, Bhattacharya A, Naaman L, Stephens H, Watford S, Boscardin WJ, Johanson E, Lienau A. Prasanna A, et al. Among authors: thovarai v. medRxiv [Preprint]. 2023 Dec 13:2023.12.11.23298687. doi: 10.1101/2023.12.11.23298687. medRxiv. 2023. PMID: 38168217 Free PMC article. Preprint.
Gut Microbiome Directs Hepatocytes to Recruit MDSCs and Promote Cholangiocarcinoma.
Zhang Q, Ma C, Duan Y, Heinrich B, Rosato U, Diggs LP, Ma L, Roy S, Fu Q, Brown ZJ, Wabitsch S, Thovarai V, Fu J, Feng D, Ruf B, Cui LL, Subramanyam V, Frank KM, Wang S, Kleiner DE, Ritz T, Rupp C, Gao B, Longerich T, Kroemer A, Wang XW, Ruchirawat M, Korangy F, Schnabl B, Trinchieri G, Greten TF. Zhang Q, et al. Among authors: thovarai v. Cancer Discov. 2021 May;11(5):1248-1267. doi: 10.1158/2159-8290.CD-20-0304. Epub 2020 Dec 15. Cancer Discov. 2021. PMID: 33323397 Free PMC article.
FAM3D is essential for colon homeostasis and host defense against inflammation associated carcinogenesis.
Liang W, Peng X, Li Q, Wang P, Lv P, Song Q, She S, Huang S, Chen K, Gong W, Yuan W, Thovarai V, Yoshimura T, O'huigin C, Trinchieri G, Huang J, Lin S, Yao X, Bian X, Kong W, Xi J, Wang JM, Wang Y. Liang W, et al. Among authors: thovarai v. Nat Commun. 2020 Nov 20;11(1):5912. doi: 10.1038/s41467-020-19691-z. Nat Commun. 2020. PMID: 33219235 Free PMC article.
A Prime/Boost Vaccine Regimen Alters the Rectal Microbiome and Impacts Immune Responses and Viremia Control Post-Simian Immunodeficiency Virus Infection in Male and Female Rhesus Macaques.
Musich T, Thovarai V, Venzon DJ, Mohanram V, Tuero I, Miller-Novak LK, Helmold Hait S, Rahman MA, Hunegnaw R, Huiting E, Yuan W, O'hUigin C, Hoang T, Sui Y, LaBranche C, Montefiori D, Bear J, Rosati M, Bissa M, Berzofsky JA, Pavlakis GN, Felber BK, Franchini G, Robert-Guroff M. Musich T, et al. Among authors: thovarai v. J Virol. 2020 Nov 23;94(24):e01225-20. doi: 10.1128/JVI.01225-20. Print 2020 Nov 23. J Virol. 2020. PMID: 32967951 Free PMC article.
Multi-omics: Differential expression of IFN-γ results in distinctive mechanistic features linking chronic inflammation, gut dysbiosis, and autoimmune diseases.
Bae HR, Leung PSC, Hodge DL, Fenimore JM, Jeon SM, Thovarai V, Dzutsev A, Welcher AA, Boedigheimer M, Damore MA, Choi MS, Fravell RA, Trinchieri G, Gershwin ME, Young HA. Bae HR, et al. Among authors: thovarai v. J Autoimmun. 2020 Jul;111:102436. doi: 10.1016/j.jaut.2020.102436. Epub 2020 Mar 24. J Autoimmun. 2020. PMID: 32220507 Free PMC article.
Aerococcus urinae and Globicatella sanguinis Persist in Polymicrobial Urethral Catheter Biofilms Examined in Longitudinal Profiles at the Proteomic Level.
Yu Y, Tsitrin T, Bekele S, Thovarai V, Torralba MG, Singh H, Wolcott R, Doerfert SN, Sizova MV, Epstein SS, Pieper R. Yu Y, et al. Among authors: thovarai v. Biochem Insights. 2019 Sep 19;12:1178626419875089. doi: 10.1177/1178626419875089. eCollection 2019. Biochem Insights. 2019. PMID: 31555049 Free PMC article.
20 results