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Patient-Specific Modeling of Diffuse Large B-Cell Lymphoma.
Biomedicines. 2021 Nov 10;9(11):1655. doi: 10.3390/biomedicines9111655.
Biomedicines. 2021.
PMID: 34829885
Free PMC article.
PEDL: extracting protein-protein associations using deep language models and distant supervision.
Weber L, Thobe K, Migueles Lozano OA, Wolf J, Leser U.
Weber L, et al. Among authors: thobe k.
Bioinformatics. 2020 Jul 1;36(Suppl_1):i490-i498. doi: 10.1093/bioinformatics/btaa430.
Bioinformatics. 2020.
PMID: 32657389
Free PMC article.
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Evaluating Uncertainty in Signaling Networks Using Logical Modeling.
Thobe K, Kuznia C, Sers C, Siebert H.
Thobe K, et al.
Front Physiol. 2018 Oct 9;9:1335. doi: 10.3389/fphys.2018.01335. eCollection 2018.
Front Physiol. 2018.
PMID: 30364151
Free PMC article.
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Unraveling the regulation of mTORC2 using logical modeling.
Thobe K, Sers C, Siebert H.
Thobe K, et al.
Cell Commun Signal. 2017 Jan 19;15(1):6. doi: 10.1186/s12964-016-0159-5.
Cell Commun Signal. 2017.
PMID: 28103956
Free PMC article.
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Data-driven optimizations for model checking of multi-valued regulatory networks.
Streck A, Thobe K, Siebert H.
Streck A, et al. Among authors: thobe k.
Biosystems. 2016 Nov;149:125-138. doi: 10.1016/j.biosystems.2016.05.004. Epub 2016 Jun 11.
Biosystems. 2016.
PMID: 27297545
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Inferring causal molecular networks: empirical assessment through a community-based effort.
Hill SM, Heiser LM, Cokelaer T, Unger M, Nesser NK, Carlin DE, Zhang Y, Sokolov A, Paull EO, Wong CK, Graim K, Bivol A, Wang H, Zhu F, Afsari B, Danilova LV, Favorov AV, Lee WS, Taylor D, Hu CW, Long BL, Noren DP, Bisberg AJ; HPN-DREAM Consortium; Mills GB, Gray JW, Kellen M, Norman T, Friend S, Qutub AA, Fertig EJ, Guan Y, Song M, Stuart JM, Spellman PT, Koeppl H, Stolovitzky G, Saez-Rodriguez J, Mukherjee S.
Hill SM, et al.
Nat Methods. 2016 Apr;13(4):310-8. doi: 10.1038/nmeth.3773. Epub 2016 Feb 22.
Nat Methods. 2016.
PMID: 26901648
Free PMC article.
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