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Community-wide assessment of protein-interface modeling suggests improvements to design methodology.
Fleishman SJ, Whitehead TA, Strauch EM, Corn JE, Qin S, Zhou HX, Mitchell JC, Demerdash ON, Takeda-Shitaka M, Terashi G, Moal IH, Li X, Bates PA, Zacharias M, Park H, Ko JS, Lee H, Seok C, Bourquard T, Bernauer J, Poupon A, Azé J, Soner S, Ovali SK, Ozbek P, Tal NB, Haliloglu T, Hwang H, Vreven T, Pierce BG, Weng Z, Pérez-Cano L, Pons C, Fernández-Recio J, Jiang F, Yang F, Gong X, Cao L, Xu X, Liu B, Wang P, Li C, Wang C, Robert CH, Guharoy M, Liu S, Huang Y, Li L, Guo D, Chen Y, Xiao Y, London N, Itzhaki Z, Schueler-Furman O, Inbar Y, Potapov V, Cohen M, Schreiber G, Tsuchiya Y, Kanamori E, Standley DM, Nakamura H, Kinoshita K, Driggers CM, Hall RG, Morgan JL, Hsu VL, Zhan J, Yang Y, Zhou Y, Kastritis PL, Bonvin AM, Zhang W, Camacho CJ, Kilambi KP, Sircar A, Gray JJ, Ohue M, Uchikoga N, Matsuzaki Y, Ishida T, Akiyama Y, Khashan R, Bush S, Fouches D, Tropsha A, Esquivel-Rodríguez J, Kihara D, Stranges PB, Jacak R, Kuhlman B, Huang SY, Zou X, Wodak SJ, Janin J, Baker D. Fleishman SJ, et al. Among authors: terashi g. J Mol Biol. 2011 Nov 25;414(2):289-302. doi: 10.1016/j.jmb.2011.09.031. Epub 2011 Sep 29. J Mol Biol. 2011. PMID: 22001016 Free PMC article.
Protein structure prediction in CASP6 using CHIMERA and FAMS.
Takeda-Shitaka M, Terashi G, Takaya D, Kanou K, Iwadate M, Umeyama H. Takeda-Shitaka M, et al. Among authors: terashi g. Proteins. 2005;61 Suppl 7:122-127. doi: 10.1002/prot.20728. Proteins. 2005. PMID: 16187353
Bioinformatics based Ligand-Docking and in-silico screening.
Takaya D, Takeda-Shitaka M, Terashi G, Kanou K, Iwadate M, Umeyama H. Takaya D, et al. Among authors: terashi g. Chem Pharm Bull (Tokyo). 2008 May;56(5):742-4. doi: 10.1248/cpb.56.742. Chem Pharm Bull (Tokyo). 2008. PMID: 18451572 Free article.
58 results