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Sensitive detection of structural features and rearrangements in long, structured RNA molecules.
Methods Enzymol. 2019;623:249-289. doi: 10.1016/bs.mie.2019.04.002. Epub 2019 Apr 22.
Methods Enzymol. 2019.
PMID: 31239050
Phylogenetic Analysis with Improved Parameters Reveals Conservation in lncRNA Structures.
Tavares RCA, Pyle AM, Somarowthu S.
Tavares RCA, et al.
J Mol Biol. 2019 Apr 5;431(8):1592-1603. doi: 10.1016/j.jmb.2019.03.012. Epub 2019 Mar 16.
J Mol Biol. 2019.
PMID: 30890332
Free PMC article.
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G-quadruplex DNA structure is a positive regulator of MYC transcription.
Esain-Garcia I, Kirchner A, Melidis L, Tavares RCA, Dhir S, Simeone A, Yu Z, Madden SK, Hermann R, Tannahill D, Balasubramanian S.
Esain-Garcia I, et al. Among authors: tavares rca.
Proc Natl Acad Sci U S A. 2024 Feb 13;121(7):e2320240121. doi: 10.1073/pnas.2320240121. Epub 2024 Feb 5.
Proc Natl Acad Sci U S A. 2024.
PMID: 38315865
Free PMC article.
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MRT-ModSeq - Rapid detection of RNA modifications with MarathonRT.
Tavares RCA, Mahadeshwar G, Wan H, Pyle AM.
Tavares RCA, et al.
bioRxiv [Preprint]. 2023 May 25:2023.05.25.542276. doi: 10.1101/2023.05.25.542276.
bioRxiv. 2023.
PMID: 37292902
Free PMC article.
Updated.
Preprint.
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RSCanner: rapid assessment and visualization of RNA structure content.
Mahadeshwar G, Tavares RCA, Wan H, Perry ZR, Pyle AM.
Mahadeshwar G, et al. Among authors: tavares rca.
Bioinformatics. 2023 Mar 1;39(3):btad111. doi: 10.1093/bioinformatics/btad111.
Bioinformatics. 2023.
PMID: 36857576
Free PMC article.
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The global and local distribution of RNA structure throughout the SARS-CoV-2 genome.
Tavares RCA, Mahadeshwar G, Wan H, Huston NC, Pyle AM.
Tavares RCA, et al.
J Virol. 2021 Mar 1;95(5):e02190-20. doi: 10.1128/JVI.02190-20. Epub 2020 Dec 2.
J Virol. 2021.
PMID: 33268519
Free PMC article.
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