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Exploration of novel αβ-protein folds through de novo design.
Nat Struct Mol Biol. 2023 Aug;30(8):1132-1140. doi: 10.1038/s41594-023-01029-0. Epub 2023 Jul 3.
Nat Struct Mol Biol. 2023.
PMID: 37400653
Free PMC article.
Control over overall shape and size in de novo designed proteins.
Lin YR, Koga N, Tatsumi-Koga R, Liu G, Clouser AF, Montelione GT, Baker D.
Lin YR, et al. Among authors: tatsumi koga r.
Proc Natl Acad Sci U S A. 2015 Oct 6;112(40):E5478-85. doi: 10.1073/pnas.1509508112. Epub 2015 Sep 22.
Proc Natl Acad Sci U S A. 2015.
PMID: 26396255
Free PMC article.
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Principles for designing ideal protein structures.
Koga N, Tatsumi-Koga R, Liu G, Xiao R, Acton TB, Montelione GT, Baker D.
Koga N, et al. Among authors: tatsumi koga r.
Nature. 2012 Nov 8;491(7423):222-7. doi: 10.1038/nature11600.
Nature. 2012.
PMID: 23135467
Free PMC article.
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Networks of electrostatic and hydrophobic interactions modulate the complex folding free energy surface of a designed βα protein.
Basak S, Nobrega RP, Tavella D, Deveau LM, Koga N, Tatsumi-Koga R, Baker D, Massi F, Matthews CR.
Basak S, et al. Among authors: tatsumi koga r.
Proc Natl Acad Sci U S A. 2019 Apr 2;116(14):6806-6811. doi: 10.1073/pnas.1818744116. Epub 2019 Mar 15.
Proc Natl Acad Sci U S A. 2019.
PMID: 30877249
Free PMC article.
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Design of complicated all-α protein structures.
Sakuma K, Kobayashi N, Sugiki T, Nagashima T, Fujiwara T, Suzuki K, Kobayashi N, Murata T, Kosugi T, Tatsumi-Koga R, Koga N.
Sakuma K, et al. Among authors: tatsumi koga r.
Nat Struct Mol Biol. 2024 Feb;31(2):275-282. doi: 10.1038/s41594-023-01147-9. Epub 2024 Jan 4.
Nat Struct Mol Biol. 2024.
PMID: 38177681
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