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Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework.
Dellicour S, Lequime S, Vrancken B, Gill MS, Bastide P, Gangavarapu K, Matteson NL, Tan Y, du Plessis L, Fisher AA, Nelson MI, Gilbert M, Suchard MA, Andersen KG, Grubaugh ND, Pybus OG, Lemey P. Dellicour S, et al. Among authors: tan y. Nat Commun. 2020 Nov 6;11(1):5620. doi: 10.1038/s41467-020-19122-z. Nat Commun. 2020. PMID: 33159066 Free PMC article.
Spatial dynamics of human-origin H1 influenza A virus in North American swine.
Nelson MI, Lemey P, Tan Y, Vincent A, Lam TT, Detmer S, Viboud C, Suchard MA, Rambaut A, Holmes EC, Gramer M. Nelson MI, et al. Among authors: tan y. PLoS Pathog. 2011 Jun;7(6):e1002077. doi: 10.1371/journal.ppat.1002077. Epub 2011 Jun 9. PLoS Pathog. 2011. PMID: 21695237 Free PMC article.
Genomic reassortment of influenza A virus in North American swine, 1998-2011.
Nelson MI, Detmer SE, Wentworth DE, Tan Y, Schwartzbard A, Halpin RA, Stockwell TB, Lin X, Vincent AL, Gramer MR, Holmes EC. Nelson MI, et al. Among authors: tan y. J Gen Virol. 2012 Dec;93(Pt 12):2584-2589. doi: 10.1099/vir.0.045930-0. Epub 2012 Sep 19. J Gen Virol. 2012. PMID: 22993190 Free PMC article.
The transmission dynamics and diversity of human metapneumovirus in Peru.
Pollett S, Trovão NS, Tan Y, Eden JS, Halpin RA, Bera J, Das SR, Wentworth D, Ocaña V, Mendocilla SM, Álvarez C, Calisto ME, Garcia J, Halsey E, Ampuero JS, Nelson MI, Leguia M. Pollett S, et al. Among authors: tan y. Influenza Other Respir Viruses. 2018 Jul;12(4):508-513. doi: 10.1111/irv.12537. Epub 2018 Mar 30. Influenza Other Respir Viruses. 2018. PMID: 29288526 Free PMC article.
Epidemiological dynamics and phylogeography of influenza virus in southern China.
Cheng X, Tan Y, He M, Lam TT, Lu X, Viboud C, He J, Zhang S, Lu J, Wu C, Fang S, Wang X, Xie X, Ma H, Nelson MI, Kung HF, Holmes EC, Cheng J. Cheng X, et al. Among authors: tan y. J Infect Dis. 2013 Jan 1;207(1):106-14. doi: 10.1093/infdis/jis526. Epub 2012 Aug 28. J Infect Dis. 2013. PMID: 22930808 Free PMC article.
Large-Scale Complete-Genome Sequencing and Phylodynamic Analysis of Eastern Equine Encephalitis Virus Reveals Source-Sink Transmission Dynamics in the United States.
Tan Y, Lam TT, Heberlein-Larson LA, Smole SC, Auguste AJ, Hennigan S, Halpin RA, Fedorova N, Puri V, Stockwell TB, Shilts MH, Andreadis T, Armstrong PM, Tesh RB, Weaver SC, Unnasch TR, Ciota AT, Kramer LD, Das SR. Tan Y, et al. J Virol. 2018 May 29;92(12):e00074-18. doi: 10.1128/JVI.00074-18. Print 2018 Jun 15. J Virol. 2018. PMID: 29618651 Free PMC article.
Differing epidemiological dynamics of Chikungunya virus in the Americas during the 2014-2015 epidemic.
Tan Y, Pickett BE, Shrivastava S, Gresh L, Balmaseda A, Amedeo P, Hu L, Puri V, Fedorova NB, Halpin RA, LaPointe MP, Cone MR, Heberlein-Larson L, Kramer LD, Ciota AT, Gordon A, Shabman RS, Das SR, Harris E. Tan Y, et al. PLoS Negl Trop Dis. 2018 Jul 30;12(7):e0006670. doi: 10.1371/journal.pntd.0006670. eCollection 2018 Jul. PLoS Negl Trop Dis. 2018. PMID: 30059496 Free PMC article.
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