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ShapeMetrics: A userfriendly pipeline for 3D cell segmentation and spatial tissue analysis.
Dev Biol. 2020 Jun 1;462(1):7-19. doi: 10.1016/j.ydbio.2020.02.003. Epub 2020 Feb 14.
Dev Biol. 2020.
PMID: 32061886
Free PMC article.
Quantitative whole-tissue 3D imaging reveals bacteria in close association with mouse jejunum mucosa.
Poceviciute R, Bogatyrev SR, Romano AE, Dilmore AH, Mondragón-Palomino O, Takko H, Pradhan O, Ismagilov RF.
Poceviciute R, et al. Among authors: takko h.
NPJ Biofilms Microbiomes. 2023 Sep 7;9(1):64. doi: 10.1038/s41522-023-00423-2.
NPJ Biofilms Microbiomes. 2023.
PMID: 37679412
Free PMC article.
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Three-dimensional imaging for the quantification of spatial patterns in microbiota of the intestinal mucosa.
Mondragón-Palomino O, Poceviciute R, Lignell A, Griffiths JA, Takko H, Ismagilov RF.
Mondragón-Palomino O, et al. Among authors: takko h.
Proc Natl Acad Sci U S A. 2022 May 3;119(18):e2118483119. doi: 10.1073/pnas.2118483119. Epub 2022 Apr 27.
Proc Natl Acad Sci U S A. 2022.
PMID: 35476531
Free PMC article.
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