Tafer H - Search Results

1

Functional repeat-derived RNAs often originate from retrotransposon-propagated ncRNAs.

Matylla-Kulinska K, Tafer H, Weiss A, Schroeder R. Matylla-Kulinska K, et al. Among authors: tafer h. Wiley Interdiscip Rev RNA. 2014 Sep-Oct;5(5):591-600. doi: 10.1002/wrna.1243. Epub 2014 Jul 9. Wiley Interdiscip Rev RNA. 2014. PMID: 25045147 Free PMC article.

2

The impact of target site accessibility on the design of effective siRNAs.

Tafer H, Ameres SL, Obernosterer G, Gebeshuber CA, Schroeder R, Martinez J, Hofacker IL. Tafer H, et al. Nat Biotechnol. 2008 May;26(5):578-83. doi: 10.1038/nbt1404. Epub 2008 Apr 27. Nat Biotechnol. 2008. PMID: 18438400

3

Unusual Novel SnoRNA-Like RNAs in Drosophila melanogaster.

Agrisani A, Tafer H, Stadler PF, Furia M. Agrisani A, et al. Among authors: tafer h. Noncoding RNA. 2015 Jul 13;1(2):139-150. doi: 10.3390/ncrna1020139. Noncoding RNA. 2015. PMID: 29861420 Free PMC article.

4

RNApredator: fast accessibility-based prediction of sRNA targets.

Eggenhofer F, Tafer H, Stadler PF, Hofacker IL. Eggenhofer F, et al. Among authors: tafer h. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W149-54. doi: 10.1093/nar/gkr467. Epub 2011 Jun 14. Nucleic Acids Res. 2011. PMID: 21672960 Free PMC article.

5

Designing optimal siRNA based on target site accessibility.

Hofacker IL, Tafer H. Hofacker IL, et al. Among authors: tafer h. Methods Mol Biol. 2010;623:137-54. doi: 10.1007/978-1-60761-588-0_9. Methods Mol Biol. 2010. PMID: 20217549

6

RNAplex: a fast tool for RNA-RNA interaction search.

Tafer H, Hofacker IL. Tafer H, et al. Bioinformatics. 2008 Nov 15;24(22):2657-63. doi: 10.1093/bioinformatics/btn193. Epub 2008 Apr 23. Bioinformatics. 2008. PMID: 18434344

7

From Glacier to Sauna: RNA-Seq of the Human Pathogen Black Fungus Exophiala dermatitidis under Varying Temperature Conditions Exhibits Common and Novel Fungal Response.

Blasi B, Tafer H, Tesei D, Sterflinger K. Blasi B, et al. Among authors: tafer h. PLoS One. 2015 Jun 10;10(6):e0127103. doi: 10.1371/journal.pone.0127103. eCollection 2015. PLoS One. 2015. PMID: 26061625 Free PMC article.

8

Structured RNAs and synteny regions in the pig genome.

Anthon C, Tafer H, Havgaard JH, Thomsen B, Hedegaard J, Seemann SE, Pundhir S, Kehr S, Bartschat S, Nielsen M, Nielsen RO, Fredholm M, Stadler PF, Gorodkin J. Anthon C, et al. Among authors: tafer h. BMC Genomics. 2014 Jun 10;15(1):459. doi: 10.1186/1471-2164-15-459. BMC Genomics. 2014. PMID: 24917120 Free PMC article.

9

Target site effects in the RNA interference and microRNA pathways.

Obernosterer G, Tafer H, Martinez J. Obernosterer G, et al. Among authors: tafer h. Biochem Soc Trans. 2008 Dec;36(Pt 6):1216-9. doi: 10.1042/BST0361216. Biochem Soc Trans. 2008. PMID: 19021528

10

Thermodynamics of RNA-RNA binding.

Mückstein U, Tafer H, Hackermüller J, Bernhart SH, Stadler PF, Hofacker IL. Mückstein U, et al. Among authors: tafer h. Bioinformatics. 2006 May 15;22(10):1177-82. doi: 10.1093/bioinformatics/btl024. Epub 2006 Jan 29. Bioinformatics. 2006. PMID: 16446276

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