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Atypical RNAs in the coelacanth transcriptome.
Nitsche A, Doose G, Tafer H, Robinson M, Saha NR, Gerdol M, Canapa A, Hoffmann S, Amemiya CT, Stadler PF. Nitsche A, et al. Among authors: tafer h. J Exp Zool B Mol Dev Evol. 2014 Sep;322(6):342-51. doi: 10.1002/jez.b.22542. Epub 2013 Oct 30. J Exp Zool B Mol Dev Evol. 2014. PMID: 24174405
Fast accessibility-based prediction of RNA-RNA interactions.
Tafer H, Amman F, Eggenhofer F, Stadler PF, Hofacker IL. Tafer H, et al. Bioinformatics. 2011 Jul 15;27(14):1934-40. doi: 10.1093/bioinformatics/btr281. Epub 2011 May 18. Bioinformatics. 2011. PMID: 21593134
snoStrip: a snoRNA annotation pipeline.
Bartschat S, Kehr S, Tafer H, Stadler PF, Hertel J. Bartschat S, et al. Among authors: tafer h. Bioinformatics. 2014 Jan 1;30(1):115-6. doi: 10.1093/bioinformatics/btt604. Epub 2013 Oct 29. Bioinformatics. 2014. PMID: 24174566
Unusual Novel SnoRNA-Like RNAs in Drosophila melanogaster.
Agrisani A, Tafer H, Stadler PF, Furia M. Agrisani A, et al. Among authors: tafer h. Noncoding RNA. 2015 Jul 13;1(2):139-150. doi: 10.3390/ncrna1020139. Noncoding RNA. 2015. PMID: 29861420 Free PMC article.
The African coelacanth genome provides insights into tetrapod evolution.
Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N, Organ C, Chalopin D, Smith JJ, Robinson M, Dorrington RA, Gerdol M, Aken B, Biscotti MA, Barucca M, Baurain D, Berlin AM, Blatch GL, Buonocore F, Burmester T, Campbell MS, Canapa A, Cannon JP, Christoffels A, De Moro G, Edkins AL, Fan L, Fausto AM, Feiner N, Forconi M, Gamieldien J, Gnerre S, Gnirke A, Goldstone JV, Haerty W, Hahn ME, Hesse U, Hoffmann S, Johnson J, Karchner SI, Kuraku S, Lara M, Levin JZ, Litman GW, Mauceli E, Miyake T, Mueller MG, Nelson DR, Nitsche A, Olmo E, Ota T, Pallavicini A, Panji S, Picone B, Ponting CP, Prohaska SJ, Przybylski D, Saha NR, Ravi V, Ribeiro FJ, Sauka-Spengler T, Scapigliati G, Searle SM, Sharpe T, Simakov O, Stadler PF, Stegeman JJ, Sumiyama K, Tabbaa D, Tafer H, Turner-Maier J, van Heusden P, White S, Williams L, Yandell M, Brinkmann H, Volff JN, Tabin CJ, Shubin N, Schartl M, Jaffe DB, Postlethwait JH, Venkatesh B, Di Palma F, Lander ES, Meyer A, Lindblad-Toh K. Amemiya CT, et al. Among authors: tafer h. Nature. 2013 Apr 18;496(7445):311-6. doi: 10.1038/nature12027. Nature. 2013. PMID: 23598338 Free PMC article.
PLEXY: efficient target prediction for box C/D snoRNAs.
Kehr S, Bartschat S, Stadler PF, Tafer H. Kehr S, et al. Among authors: tafer h. Bioinformatics. 2011 Jan 15;27(2):279-80. doi: 10.1093/bioinformatics/btq642. Epub 2010 Nov 13. Bioinformatics. 2011. PMID: 21076148
Non-coding RNA annotation of the genome of Trichoplax adhaerens.
Hertel J, de Jong D, Marz M, Rose D, Tafer H, Tanzer A, Schierwater B, Stadler PF. Hertel J, et al. Among authors: tafer h. Nucleic Acids Res. 2009 Apr;37(5):1602-15. doi: 10.1093/nar/gkn1084. Epub 2009 Jan 16. Nucleic Acids Res. 2009. PMID: 19151082 Free PMC article.
The duck genome and transcriptome provide insight into an avian influenza virus reservoir species.
Huang Y, Li Y, Burt DW, Chen H, Zhang Y, Qian W, Kim H, Gan S, Zhao Y, Li J, Yi K, Feng H, Zhu P, Li B, Liu Q, Fairley S, Magor KE, Du Z, Hu X, Goodman L, Tafer H, Vignal A, Lee T, Kim KW, Sheng Z, An Y, Searle S, Herrero J, Groenen MAM, Crooijmans RPMA, Faraut T, Cai Q, Webster RG, Aldridge JR, Warren WC, Bartschat S, Kehr S, Marz M, Stadler PF, Smith J, Kraus RHS, Zhao Y, Ren L, Fei J, Morisson M, Kaiser P, Griffin DK, Rao M, Pitel F, Wang J, Li N. Huang Y, et al. Among authors: tafer h. Nat Genet. 2013 Jul;45(7):776-783. doi: 10.1038/ng.2657. Epub 2013 Jun 9. Nat Genet. 2013. PMID: 23749191 Free PMC article.
52 results