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Predicting the effects of SNPs on transcription factor binding affinity.
Nishizaki SS, Ng N, Dong S, Porter RS, Morterud C, Williams C, Asman C, Switzenberg JA, Boyle AP. Nishizaki SS, et al. Among authors: switzenberg ja. Bioinformatics. 2020 Jan 15;36(2):364-372. doi: 10.1093/bioinformatics/btz612. Bioinformatics. 2020. PMID: 31373606 Free PMC article.
The Inducible lac Operator-Repressor System Is Functional in Zebrafish Cells.
Nishizaki SS, McDonald TL, Farnum GA, Holmes MJ, Drexel ML, Switzenberg JA, Boyle AP. Nishizaki SS, et al. Among authors: switzenberg ja. Front Genet. 2021 Jun 18;12:683394. doi: 10.3389/fgene.2021.683394. eCollection 2021. Front Genet. 2021. PMID: 34220959 Free PMC article.
Cas9 targeted enrichment of mobile elements using nanopore sequencing.
McDonald TL, Zhou W, Castro CP, Mumm C, Switzenberg JA, Mills RE, Boyle AP. McDonald TL, et al. Among authors: switzenberg ja. Nat Commun. 2021 Jun 11;12(1):3586. doi: 10.1038/s41467-021-23918-y. Nat Commun. 2021. PMID: 34117247 Free PMC article.
Multiplexed long-read plasmid validation and analysis using OnRamp.
Mumm C, Drexel ML, McDonald TL, Diehl AG, Switzenberg JA, Boyle AP. Mumm C, et al. Among authors: switzenberg ja. Genome Res. 2023 May;33(5):741-749. doi: 10.1101/gr.277369.122. Epub 2023 May 8. Genome Res. 2023. PMID: 37156622 Free PMC article.