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Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection.
Chaguza C, Hahn AM, Petrone ME, Zhou S, Ferguson D, Breban MI, Pham K, Peña-Hernández MA, Castaldi C, Hill V; Yale SARS-CoV-2 Genomic Surveillance Initiative; Schulz W, Swanstrom RI, Roberts SC, Grubaugh ND. Chaguza C, et al. medRxiv [Preprint]. 2022 Jul 2:2022.06.29.22276868. doi: 10.1101/2022.06.29.22276868. medRxiv. 2022. PMID: 35794895 Free PMC article. Updated. Preprint.
Sequence Analysis of Inducible, Replication-Competent Virus Reveals No Evidence of HIV-1 Evolution During Suppressive Antiviral Therapy, Indicating a Lack of Ongoing Viral Replication.
Lee SK, Sondgeroth A, Xu Y, Warren J, Zhou S, Gilleece M, Hauser BM, Gay CL, Kuruc JD, Archin NM, Eron JJ, Margolis DM, Goonetilleke N, Swanstrom R. Lee SK, et al. Among authors: swanstrom r. Open Forum Infect Dis. 2024 Apr 17;11(5):ofae212. doi: 10.1093/ofid/ofae212. eCollection 2024 May. Open Forum Infect Dis. 2024. PMID: 38756763 Free PMC article.
Changes in Cerebrospinal Fluid Proteins across the Spectrum of Untreated and Treated Chronic HIV-1 Infection.
Hu Z, Cinque P, Dravid A, Hagberg L, Yilmaz A, Zetterberg H, Fuchs D, Gostner J, Blennow K, Spudich SS, Kincer L, Zhou S, Joseph S, Swanstrom R, Price RW, Gisslén M. Hu Z, et al. Among authors: swanstrom r. bioRxiv [Preprint]. 2024 May 5:2024.05.03.592451. doi: 10.1101/2024.05.03.592451. bioRxiv. 2024. PMID: 38746436 Free PMC article. Preprint.
Development, confirmation, and application of a seeded Escherichia coli process control organism to validate Salmonella enterica serovar Typhi environmental surveillance methods.
Philo SE, Zhou NA, Lillis LM, Raghava V, Abraham D, Kumar V, Kumar N, Rigby J, Harrison JC, Fagnant-Sperati CS, Kossik AL, Ong AQW, Swanstrom R, Burnor E, Demeke B, Beck NK, Shirai JH, Libby SJ, Boyle DS, Feasey N, Kang G, Meschke JS. Philo SE, et al. Among authors: swanstrom r. PLoS One. 2024 May 7;19(5):e0301624. doi: 10.1371/journal.pone.0301624. eCollection 2024. PLoS One. 2024. PMID: 38713678 Free PMC article.
The timing of HIV-1 infection of cells that persist on therapy is not strongly influenced by replication competency or cellular tropism of the provirus.
Joseph SB, Abrahams MR, Moeser M, Tyers L, Archin NM, Council OD, Sondgeroth A, Spielvogel E, Emery A, Zhou S, Doolabh D, Ismail SD, Karim SA, Margolis DM, Pond SK, Garrett N, Swanstrom R, Williamson C. Joseph SB, et al. Among authors: swanstrom r. PLoS Pathog. 2024 Feb 29;20(2):e1011974. doi: 10.1371/journal.ppat.1011974. eCollection 2024 Feb. PLoS Pathog. 2024. PMID: 38422171 Free PMC article.
Use of Next-Generation Sequencing in a State-Wide Strategy of HIV-1 Surveillance: Impact of the SARS-COV-2 Pandemic on HIV-1 Diagnosis and Transmission.
Zhou S, Long N, Moeser M, Hill CS, Samoff E, Mobley V, Frost S, Bayer C, Kelly E, Greifinger A, Shone S, Glover W, Clark M, Eron J, Cohen M, Swanstrom R, Dennis AM. Zhou S, et al. Among authors: swanstrom r. J Infect Dis. 2023 Dec 20;228(12):1758-1765. doi: 10.1093/infdis/jiad211. J Infect Dis. 2023. PMID: 37283544
272 results