Sung WK - Search Results

1

Calling large indels in 1047 Arabidopsis with IndelEnsembler.

Liu DX, Rajaby R, Wei LL, Zhang L, Yang ZQ, Yang QY, Sung WK. Liu DX, et al. Among authors: sung wk. Nucleic Acids Res. 2021 Nov 8;49(19):10879-10894. doi: 10.1093/nar/gkab904. Nucleic Acids Res. 2021. PMID: 34643730 Free PMC article.

2

Algorithms for the Majority Rule (+) Consensus Tree and the Frequency Difference Consensus Tree.

Jansson J, Rajaby R, Shen C, Sung WK. Jansson J, et al. Among authors: sung wk. IEEE/ACM Trans Comput Biol Bioinform. 2018 Jan-Feb;15(1):15-26. doi: 10.1109/TCBB.2016.2609923. Epub 2016 Sep 20. IEEE/ACM Trans Comput Biol Bioinform. 2018. PMID: 27662679

3

Determining the Consistency of Resolved Triplets and Fan Triplets.

Jansson J, Lingas A, Rajaby R, Sung WK. Jansson J, et al. Among authors: sung wk. J Comput Biol. 2018 Jul;25(7):740-754. doi: 10.1089/cmb.2017.0256. Epub 2018 Feb 16. J Comput Biol. 2018. PMID: 29451395

4

TranSurVeyor: an improved database-free algorithm for finding non-reference transpositions in high-throughput sequencing data.

Rajaby R, Sung WK. Rajaby R, et al. Among authors: sung wk. Nucleic Acids Res. 2018 Nov 16;46(20):e122. doi: 10.1093/nar/gky685. Nucleic Acids Res. 2018. PMID: 30137425 Free PMC article.

5

SurVIndel: improving CNV calling from high-throughput sequencing data through statistical testing.

Rajaby R, Sung WK. Rajaby R, et al. Among authors: sung wk. Bioinformatics. 2021 Jul 12;37(11):1497-1505. doi: 10.1093/bioinformatics/btz261. Bioinformatics. 2021. PMID: 30989231

6

An Efficient Algorithm for the Rooted Triplet Distance Between Galled Trees.

Jansson J, Rajaby R, Sung WK. Jansson J, et al. Among authors: sung wk. J Comput Biol. 2019 Sep;26(9):893-907. doi: 10.1089/cmb.2019.0033. Epub 2019 Apr 16. J Comput Biol. 2019. PMID: 30990336

7

SurVirus: a repeat-aware virus integration caller.

Rajaby R, Zhou Y, Meng Y, Zeng X, Li G, Wu P, Sung WK. Rajaby R, et al. Among authors: sung wk. Nucleic Acids Res. 2021 Apr 6;49(6):e33. doi: 10.1093/nar/gkaa1237. Nucleic Acids Res. 2021. PMID: 33444454 Free PMC article.

8

ASMdb: a comprehensive database for allele-specific DNA methylation in diverse organisms.

Zhou Q, Guan P, Zhu Z, Cheng S, Zhou C, Wang H, Xu Q, Sung WK, Li G. Zhou Q, et al. Among authors: sung wk. Nucleic Acids Res. 2022 Jan 7;50(D1):D60-D71. doi: 10.1093/nar/gkab937. Nucleic Acids Res. 2022. PMID: 34664666 Free PMC article.

9

INSurVeyor: improving insertion calling from short read sequencing data.

Rajaby R, Liu DX, Au CH, Cheung YT, Lau AYT, Yang QY, Sung WK. Rajaby R, et al. Among authors: sung wk. Nat Commun. 2023 Jun 5;14(1):3243. doi: 10.1038/s41467-023-38870-2. Nat Commun. 2023. PMID: 37277343 Free PMC article.

10

Constructing telomere-to-telomere diploid genome by polishing haploid nanopore-based assembly.

Darian JC, Kundu R, Rajaby R, Sung WK. Darian JC, et al. Among authors: sung wk. Nat Methods. 2024 Apr;21(4):574-583. doi: 10.1038/s41592-023-02141-1. Epub 2024 Mar 8. Nat Methods. 2024. PMID: 38459383

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