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Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle.
Low WY, Rosen BD, Ren Y, Bickhart DM, To TH, Martin FJ, Billis K, Sonstegard TS, Sullivan ST, Hiendleder S, Williams JL, Heaton MP, Smith TPL. Low WY, et al. Among authors: sullivan st. BMC Genomics. 2022 May 4;23(1):344. doi: 10.1186/s12864-022-08561-1. BMC Genomics. 2022. PMID: 35508966 Free PMC article.
Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C.
Kronenberg ZN, Rhie A, Koren S, Concepcion GT, Peluso P, Munson KM, Porubsky D, Kuhn K, Mueller KA, Low WY, Hiendleder S, Fedrigo O, Liachko I, Hall RJ, Phillippy AM, Eichler EE, Williams JL, Smith TPL, Jarvis ED, Sullivan ST, Kingan SB. Kronenberg ZN, et al. Among authors: sullivan st. Nat Commun. 2021 Apr 28;12(1):1935. doi: 10.1038/s41467-020-20536-y. Nat Commun. 2021. PMID: 33911078 Free PMC article.
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome.
Bickhart DM, Rosen BD, Koren S, Sayre BL, Hastie AR, Chan S, Lee J, Lam ET, Liachko I, Sullivan ST, Burton JN, Huson HJ, Nystrom JC, Kelley CM, Hutchison JL, Zhou Y, Sun J, Crisà A, Ponce de León FA, Schwartz JC, Hammond JA, Waldbieser GC, Schroeder SG, Liu GE, Dunham MJ, Shendure J, Sonstegard TS, Phillippy AM, Van Tassell CP, Smith TP. Bickhart DM, et al. Among authors: sullivan st. Nat Genet. 2017 Apr;49(4):643-650. doi: 10.1038/ng.3802. Epub 2017 Mar 6. Nat Genet. 2017. PMID: 28263316 Free PMC article.
Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation.
Bickhart DM, Watson M, Koren S, Panke-Buisse K, Cersosimo LM, Press MO, Van Tassell CP, Van Kessel JAS, Haley BJ, Kim SW, Heiner C, Suen G, Bakshy K, Liachko I, Sullivan ST, Myer PR, Ghurye J, Pop M, Weimer PJ, Phillippy AM, Smith TPL. Bickhart DM, et al. Among authors: sullivan st. Genome Biol. 2019 Aug 2;20(1):153. doi: 10.1186/s13059-019-1760-x. Genome Biol. 2019. PMID: 31375138 Free PMC article.
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities.
Bickhart DM, Kolmogorov M, Tseng E, Portik DM, Korobeynikov A, Tolstoganov I, Uritskiy G, Liachko I, Sullivan ST, Shin SB, Zorea A, Andreu VP, Panke-Buisse K, Medema MH, Mizrahi I, Pevzner PA, Smith TPL. Bickhart DM, et al. Among authors: sullivan st. Nat Biotechnol. 2022 May;40(5):711-719. doi: 10.1038/s41587-021-01130-z. Epub 2022 Jan 3. Nat Biotechnol. 2022. PMID: 34980911
Integration of multi-omics data reveals cis-regulatory variants that are associated with phenotypic differentiation of eastern from western pigs.
Liu Y, Fu Y, Yang Y, Yi G, Lian J, Xie B, Yao Y, Chen M, Niu Y, Liu L, Wang L, Zhang Y, Fan X, Tang Y, Yuan P, Zhu M, Li Q, Zhang S, Chen Y, Wang B, He J, Lu D, Liachko I, Sullivan ST, Pang B, Chen Y, He X, Li K, Tang Z. Liu Y, et al. Among authors: sullivan st. Genet Sel Evol. 2022 Sep 14;54(1):62. doi: 10.1186/s12711-022-00754-2. Genet Sel Evol. 2022. PMID: 36104777 Free PMC article.
The genome of the zebra mussel, Dreissena polymorpha: a resource for comparative genomics, invasion genetics, and biocontrol.
McCartney MA, Auch B, Kono T, Mallez S, Zhang Y, Obille A, Becker A, Abrahante JE, Garbe J, Badalamenti JP, Herman A, Mangelson H, Liachko I, Sullivan S, Sone ED, Koren S, Silverstein KAT, Beckman KB, Gohl DM. McCartney MA, et al. G3 (Bethesda). 2022 Feb 4;12(2):jkab423. doi: 10.1093/g3journal/jkab423. G3 (Bethesda). 2022. PMID: 34897429 Free PMC article.
Mapping and Dynamics of Regulatory DNA in Maturing Arabidopsis thaliana Siliques.
Sullivan AM, Arsovski AA, Thompson A, Sandstrom R, Thurman RE, Neph S, Johnson AK, Sullivan ST, Sabo PJ, Neri FV 3rd, Weaver M, Diegel M, Nemhauser JL, Stamatoyannopoulos JA, Bubb KL, Queitsch C. Sullivan AM, et al. Among authors: sullivan st. Front Plant Sci. 2019 Nov 14;10:1434. doi: 10.3389/fpls.2019.01434. eCollection 2019. Front Plant Sci. 2019. PMID: 31798605 Free PMC article.
46 results