Sugimoto Y - Search Results

1

Using hiCLIP to identify RNA duplexes that interact with a specific RNA-binding protein.

Sugimoto Y, Chakrabarti AM, Luscombe NM, Ule J. Sugimoto Y, et al. Nat Protoc. 2017 Mar;12(3):611-637. doi: 10.1038/nprot.2016.188. Epub 2017 Feb 23. Nat Protoc. 2017. PMID: 28230851

2

hiCLIP reveals the in vivo atlas of mRNA secondary structures recognized by Staufen 1.

Sugimoto Y, Vigilante A, Darbo E, Zirra A, Militti C, D'Ambrogio A, Luscombe NM, Ule J. Sugimoto Y, et al. Nature. 2015 Mar 26;519(7544):491-4. doi: 10.1038/nature14280. Epub 2015 Mar 18. Nature. 2015. PMID: 25799984 Free PMC article.

3

iCLIP: protein-RNA interactions at nucleotide resolution.

Huppertz I, Attig J, D'Ambrogio A, Easton LE, Sibley CR, Sugimoto Y, Tajnik M, König J, Ule J. Huppertz I, et al. Among authors: sugimoto y. Methods. 2014 Feb;65(3):274-87. doi: 10.1016/j.ymeth.2013.10.011. Epub 2013 Oct 25. Methods. 2014. PMID: 24184352 Free PMC article.

4

A retained intron in the 3'-UTR of Calm3 mRNA mediates its Staufen2- and activity-dependent localization to neuronal dendrites.

Sharangdhar T, Sugimoto Y, Heraud-Farlow J, Fernández-Moya SM, Ehses J, Ruiz de Los Mozos I, Ule J, Kiebler MA. Sharangdhar T, et al. Among authors: sugimoto y. EMBO Rep. 2017 Oct;18(10):1762-1774. doi: 10.15252/embr.201744334. Epub 2017 Aug 1. EMBO Rep. 2017. PMID: 28765142 Free PMC article.

5

Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions.

Sugimoto Y, König J, Hussain S, Zupan B, Curk T, Frye M, Ule J. Sugimoto Y, et al. Genome Biol. 2012 Aug 3;13(8):R67. doi: 10.1186/gb-2012-13-8-r67. Genome Biol. 2012. PMID: 22863408 Free PMC article.

6

Widespread binding of FUS along nascent RNA regulates alternative splicing in the brain.

Rogelj B, Easton LE, Bogu GK, Stanton LW, Rot G, Curk T, Zupan B, Sugimoto Y, Modic M, Haberman N, Tollervey J, Fujii R, Takumi T, Shaw CE, Ule J. Rogelj B, et al. Among authors: sugimoto y. Sci Rep. 2012;2:603. doi: 10.1038/srep00603. Epub 2012 Aug 28. Sci Rep. 2012. PMID: 22934129 Free PMC article.

7

NSun2-mediated cytosine-5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs.

Hussain S, Sajini AA, Blanco S, Dietmann S, Lombard P, Sugimoto Y, Paramor M, Gleeson JG, Odom DT, Ule J, Frye M. Hussain S, et al. Among authors: sugimoto y. Cell Rep. 2013 Jul 25;4(2):255-61. doi: 10.1016/j.celrep.2013.06.029. Epub 2013 Jul 18. Cell Rep. 2013. PMID: 23871666 Free PMC article.

8

Structure of the large ribosomal subunit from human mitochondria.

Brown A, Amunts A, Bai XC, Sugimoto Y, Edwards PC, Murshudov G, Scheres SHW, Ramakrishnan V. Brown A, et al. Among authors: sugimoto y. Science. 2014 Nov 7;346(6210):718-722. doi: 10.1126/science.1258026. Epub 2014 Oct 2. Science. 2014. PMID: 25278503 Free PMC article.

9

Acute exacerbation predicting poor outcomes in idiopathic interstitial pneumonia and advanced lung cancer patients undergoing cytotoxic chemotherapy.

Miyamoto A, Michimae H, Nakahara Y, Akagawa S, Nakagawa K, Minegishi Y, Ogura T, Hontsu S, Date H, Takahashi K, Homma S, Kishi K; Investigators Group for Lung Cancer and IIP. Miyamoto A, et al. Sci Rep. 2024 May 3;14(1):10162. doi: 10.1038/s41598-024-60833-w. Sci Rep. 2024. PMID: 38702426 Free PMC article.

10

2-oxoglutarate-dependent dioxygenases and BAHD acyltransferases drive the structural diversification of orobanchol in Fabaceae plants.

Homma M, Uchida K, Wakabayashi T, Mizutani M, Takikawa H, Sugimoto Y. Homma M, et al. Among authors: sugimoto y. Front Plant Sci. 2024 Apr 18;15:1392212. doi: 10.3389/fpls.2024.1392212. eCollection 2024. Front Plant Sci. 2024. PMID: 38699535 Free PMC article.

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