Stubbs AP - Search Results

1

NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy.

de Koning W, Miladi M, Hiltemann S, Heikema A, Hays JP, Flemming S, van den Beek M, Mustafa DA, Backofen R, Grüning B, Stubbs AP. de Koning W, et al. Among authors: stubbs ap. Gigascience. 2020 Oct 17;9(10):giaa105. doi: 10.1093/gigascience/giaa105. Gigascience. 2020. PMID: 33068114 Free PMC article.

2

Huvariome: a web server resource of whole genome next-generation sequencing allelic frequencies to aid in pathological candidate gene selection.

Stubbs A, McClellan EA, Horsman S, Hiltemann SD, Palli I, Nouwens S, Koning AH, Hoogland F, Reumers J, Heijsman D, Swagemakers S, Kremer A, Meijerink J, Lambrechts D, van der Spek PJ. Stubbs A, et al. J Clin Bioinforma. 2012 Nov 19;2(1):19. doi: 10.1186/2043-9113-2-19. J Clin Bioinforma. 2012. PMID: 23164068 Free PMC article.

3

Gene fusions by chromothripsis of chromosome 5q in the VCaP prostate cancer cell line.

Teles Alves I, Hiltemann S, Hartjes T, van der Spek P, Stubbs A, Trapman J, Jenster G. Teles Alves I, et al. Hum Genet. 2013 Jun;132(6):709-13. doi: 10.1007/s00439-013-1308-1. Epub 2013 Apr 25. Hum Genet. 2013. PMID: 23615946

4

iFUSE: integrated fusion gene explorer.

Hiltemann S, McClellan EA, van Nijnatten J, Horsman S, Palli I, Teles Alves I, Hartjes T, Trapman J, van der Spek P, Jenster G, Stubbs A. Hiltemann S, et al. Bioinformatics. 2013 Jul 1;29(13):1700-1. doi: 10.1093/bioinformatics/btt252. Epub 2013 May 9. Bioinformatics. 2013. PMID: 23661695

5

CGtag: complete genomics toolkit and annotation in a cloud-based Galaxy.

Hiltemann S, Mei H, de Hollander M, Palli I, van der Spek P, Jenster G, Stubbs A. Hiltemann S, et al. Gigascience. 2014 Jan 24;3(1):1. doi: 10.1186/2047-217X-3-1. Gigascience. 2014. PMID: 24460651 Free PMC article.

6

Next-generation sequencing reveals novel rare fusion events with functional implication in prostate cancer.

Teles Alves I, Hartjes T, McClellan E, Hiltemann S, Böttcher R, Dits N, Temanni MR, Janssen B, van Workum W, van der Spek P, Stubbs A, de Klein A, Eussen B, Trapman J, Jenster G. Teles Alves I, et al. Oncogene. 2015 Jan 29;34(5):568-77. doi: 10.1038/onc.2013.591. Epub 2014 Feb 3. Oncogene. 2015. PMID: 24488012

7

iReport: a generalised Galaxy solution for integrated experimental reporting.

Hiltemann S, Hoogstrate Y, der Spek Pv, Jenster G, Stubbs A. Hiltemann S, et al. Gigascience. 2014 Oct 13;3:19. doi: 10.1186/2047-217X-3-19. eCollection 2014. Gigascience. 2014. PMID: 25374662 Free PMC article.

8

ImmunoGlobulin galaxy (IGGalaxy) for simple determination and quantitation of immunoglobulin heavy chain rearrangements from NGS.

Moorhouse MJ, van Zessen D, IJspeert H, Hiltemann S, Horsman S, van der Spek PJ, van der Burg M, Stubbs AP. Moorhouse MJ, et al. Among authors: stubbs ap. BMC Immunol. 2014 Dec 13;15:59. doi: 10.1186/s12865-014-0059-7. BMC Immunol. 2014. PMID: 25495099 Free PMC article.

9

Discriminating somatic and germline mutations in tumor DNA samples without matching normals.

Hiltemann S, Jenster G, Trapman J, van der Spek P, Stubbs A. Hiltemann S, et al. Genome Res. 2015 Sep;25(9):1382-90. doi: 10.1101/gr.183053.114. Epub 2015 Jul 24. Genome Res. 2015. PMID: 26209359 Free PMC article.

10

FuMa: reporting overlap in RNA-seq detected fusion genes.

Hoogstrate Y, Böttcher R, Hiltemann S, van der Spek PJ, Jenster G, Stubbs AP. Hoogstrate Y, et al. Among authors: stubbs ap. Bioinformatics. 2016 Apr 15;32(8):1226-8. doi: 10.1093/bioinformatics/btv721. Epub 2015 Dec 10. Bioinformatics. 2016. PMID: 26656567

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