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Editorial: Computational Methods for Microbiome Analysis.
Setubal JC, Stoye J, Dutilh BE. Setubal JC, et al. Among authors: stoye j. Front Genet. 2020 Dec 11;11:623897. doi: 10.3389/fgene.2020.623897. eCollection 2020. Front Genet. 2020. PMID: 33362871 Free PMC article. No abstract available.
Pan-Genome Storage and Analysis Techniques.
Zekic T, Holley G, Stoye J. Zekic T, et al. Among authors: stoye j. Methods Mol Biol. 2018;1704:29-53. doi: 10.1007/978-1-4939-7463-4_2. Methods Mol Biol. 2018. PMID: 29277862 Review.
Flexible metagenome analysis using the MGX framework.
Jaenicke S, Albaum SP, Blumenkamp P, Linke B, Stoye J, Goesmann A. Jaenicke S, et al. Among authors: stoye j. Microbiome. 2018 Apr 24;6(1):76. doi: 10.1186/s40168-018-0460-1. Microbiome. 2018. PMID: 29690922 Free PMC article.
ReadXplorer--visualization and analysis of mapped sequences.
Hilker R, Stadermann KB, Doppmeier D, Kalinowski J, Stoye J, Straube J, Winnebald J, Goesmann A. Hilker R, et al. Among authors: stoye j. Bioinformatics. 2014 Aug 15;30(16):2247-54. doi: 10.1093/bioinformatics/btu205. Epub 2014 Apr 30. Bioinformatics. 2014. PMID: 24790157 Free PMC article.
Computing the Rearrangement Distance of Natural Genomes.
Bohnenkämper L, Braga MDV, Doerr D, Stoye J. Bohnenkämper L, et al. Among authors: stoye j. J Comput Biol. 2021 Apr;28(4):410-431. doi: 10.1089/cmb.2020.0434. Epub 2020 Dec 30. J Comput Biol. 2021. PMID: 33393848 Free PMC article.
Sequence-based pangenomic core detection.
Schulz T, Wittler R, Stoye J. Schulz T, et al. Among authors: stoye j. iScience. 2022 May 16;25(6):104413. doi: 10.1016/j.isci.2022.104413. eCollection 2022 Jun 17. iScience. 2022. PMID: 35663029 Free PMC article.
250 results