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Nucleome programming is required for the foundation of totipotency in mammalian germline development.
Nagano M, Hu B, Yokobayashi S, Yamamura A, Umemura F, Coradin M, Ohta H, Yabuta Y, Ishikura Y, Okamoto I, Ikeda H, Kawahira N, Nosaka Y, Shimizu S, Kojima Y, Mizuta K, Kasahara T, Imoto Y, Meehan K, Stocsits R, Wutz G, Hiraoka Y, Murakawa Y, Yamamoto T, Tachibana K, Peters JM, Mirny LA, Garcia BA, Majewski J, Saitou M. Nagano M, et al. Among authors: stocsits r. EMBO J. 2022 Jul 4;41(13):e110600. doi: 10.15252/embj.2022110600. Epub 2022 Jun 15. EMBO J. 2022. PMID: 35703121 Free PMC article.
Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.
Wutz G, Várnai C, Nagasaka K, Cisneros DA, Stocsits RR, Tang W, Schoenfelder S, Jessberger G, Muhar M, Hossain MJ, Walther N, Koch B, Kueblbeck M, Ellenberg J, Zuber J, Fraser P, Peters JM. Wutz G, et al. Among authors: stocsits rr. EMBO J. 2017 Dec 15;36(24):3573-3599. doi: 10.15252/embj.201798004. Epub 2017 Dec 7. EMBO J. 2017. PMID: 29217591 Free PMC article.
MCM complexes are barriers that restrict cohesin-mediated loop extrusion.
Dequeker BJH, Scherr MJ, Brandão HB, Gassler J, Powell S, Gaspar I, Flyamer IM, Lalic A, Tang W, Stocsits R, Davidson IF, Peters JM, Duderstadt KE, Mirny LA, Tachibana K. Dequeker BJH, et al. Among authors: stocsits r. Nature. 2022 Jun;606(7912):197-203. doi: 10.1038/s41586-022-04730-0. Epub 2022 May 18. Nature. 2022. PMID: 35585235 Free PMC article.
Transcription shapes 3D chromatin organization by interacting with loop extrusion.
Banigan EJ, Tang W, van den Berg AA, Stocsits RR, Wutz G, Brandão HB, Busslinger GA, Peters JM, Mirny LA. Banigan EJ, et al. Among authors: stocsits rr. Proc Natl Acad Sci U S A. 2023 Mar 14;120(11):e2210480120. doi: 10.1073/pnas.2210480120. Epub 2023 Mar 10. Proc Natl Acad Sci U S A. 2023. PMID: 36897969 Free PMC article.
ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL.
Wutz G, Ladurner R, St Hilaire BG, Stocsits RR, Nagasaka K, Pignard B, Sanborn A, Tang W, Várnai C, Ivanov MP, Schoenfelder S, van der Lelij P, Huang X, Dürnberger G, Roitinger E, Mechtler K, Davidson IF, Fraser P, Lieberman-Aiden E, Peters JM. Wutz G, et al. Among authors: stocsits rr. Elife. 2020 Feb 17;9:e52091. doi: 10.7554/eLife.52091. Elife. 2020. PMID: 32065581 Free PMC article.
Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl.
Busslinger GA, Stocsits RR, van der Lelij P, Axelsson E, Tedeschi A, Galjart N, Peters JM. Busslinger GA, et al. Among authors: stocsits rr. Nature. 2017 Apr 27;544(7651):503-507. doi: 10.1038/nature22063. Epub 2017 Apr 19. Nature. 2017. PMID: 28424523 Free PMC article.
Dynamics of sister chromatid resolution during cell cycle progression.
Stanyte R, Nuebler J, Blaukopf C, Hoefler R, Stocsits R, Peters JM, Gerlich DW. Stanyte R, et al. Among authors: stocsits r. J Cell Biol. 2018 Jun 4;217(6):1985-2004. doi: 10.1083/jcb.201801157. Epub 2018 Apr 25. J Cell Biol. 2018. PMID: 29695489 Free PMC article.
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