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Building a local community of practice in scientific programming for life scientists.
PLoS Biol. 2018 Nov 28;16(11):e2005561. doi: 10.1371/journal.pbio.2005561. eCollection 2018 Nov.
PLoS Biol. 2018.
PMID: 30485260
Free PMC article.
Community-led, integrated, reproducible multi-omics with anvi'o.
Eren AM, Kiefl E, Shaiber A, Veseli I, Miller SE, Schechter MS, Fink I, Pan JN, Yousef M, Fogarty EC, Trigodet F, Watson AR, Esen ÖC, Moore RM, Clayssen Q, Lee MD, Kivenson V, Graham ED, Merrill BD, Karkman A, Blankenberg D, Eppley JM, Sjödin A, Scott JJ, Vázquez-Campos X, McKay LJ, McDaniel EA, Stevens SLR, Anderson RE, Fuessel J, Fernandez-Guerra A, Maignien L, Delmont TO, Willis AD.
Eren AM, et al. Among authors: stevens slr.
Nat Microbiol. 2021 Jan;6(1):3-6. doi: 10.1038/s41564-020-00834-3.
Nat Microbiol. 2021.
PMID: 33349678
Free PMC article.
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Diversity, distribution, and expression of opsin genes in freshwater lakes.
He S, Linz AM, Stevens SLR, Tran PQ, Moya-Flores F, Oyserman BO, Dwulit-Smith JR, Forest KT, McMahon KD.
He S, et al. Among authors: stevens slr.
Mol Ecol. 2023 Jun;32(11):2798-2817. doi: 10.1111/mec.16891. Epub 2023 Mar 7.
Mol Ecol. 2023.
PMID: 36799010
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Freshwater carbon and nutrient cycles revealed through reconstructed population genomes.
Linz AM, He S, Stevens SLR, Anantharaman K, Rohwer RR, Malmstrom RR, Bertilsson S, McMahon KD.
Linz AM, et al. Among authors: stevens slr.
PeerJ. 2018 Dec 10;6:e6075. doi: 10.7717/peerj.6075. eCollection 2018.
PeerJ. 2018.
PMID: 30581671
Free PMC article.
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Ecophysiology of Freshwater Verrucomicrobia Inferred from Metagenome-Assembled Genomes.
He S, Stevens SLR, Chan LK, Bertilsson S, Glavina Del Rio T, Tringe SG, Malmstrom RR, McMahon KD.
He S, et al. Among authors: stevens slr.
mSphere. 2017 Sep 27;2(5):e00277-17. doi: 10.1128/mSphere.00277-17. eCollection 2017 Sep-Oct.
mSphere. 2017.
PMID: 28959738
Free PMC article.
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Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations.
Garcia SL, Stevens SLR, Crary B, Martinez-Garcia M, Stepanauskas R, Woyke T, Tringe SG, Andersson SGE, Bertilsson S, Malmstrom RR, McMahon KD.
Garcia SL, et al. Among authors: stevens slr.
ISME J. 2018 Mar;12(3):742-755. doi: 10.1038/s41396-017-0001-0. Epub 2017 Dec 8.
ISME J. 2018.
PMID: 29222442
Free PMC article.
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Expanded Phylogenetic Diversity and Metabolic Flexibility of Mercury-Methylating Microorganisms.
McDaniel EA, Peterson BD, Stevens SLR, Tran PQ, Anantharaman K, McMahon KD.
McDaniel EA, et al. Among authors: stevens slr.
mSystems. 2020 Aug 18;5(4):e00299-20. doi: 10.1128/mSystems.00299-20.
mSystems. 2020.
PMID: 32817383
Free PMC article.
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Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations.
Bendall ML, Stevens SL, Chan LK, Malfatti S, Schwientek P, Tremblay J, Schackwitz W, Martin J, Pati A, Bushnell B, Froula J, Kang D, Tringe SG, Bertilsson S, Moran MA, Shade A, Newton RJ, McMahon KD, Malmstrom RR.
Bendall ML, et al.
ISME J. 2016 Jul;10(7):1589-601. doi: 10.1038/ismej.2015.241. Epub 2016 Jan 8.
ISME J. 2016.
PMID: 26744812
Free PMC article.
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