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Genome Assembly and Annotation of the Trichoplusia ni Tni-FNL Insect Cell Line Enabled by Long-Read Technologies.
Talsania K, Mehta M, Raley C, Kriga Y, Gowda S, Grose C, Drew M, Roberts V, Cheng KT, Burkett S, Oeser S, Stephens R, Soppet D, Chen X, Kumar P, German O, Smirnova T, Hautman C, Shetty J, Tran B, Zhao Y, Esposito D. Talsania K, et al. Among authors: stephens r. Genes (Basel). 2019 Jan 23;10(2):79. doi: 10.3390/genes10020079. Genes (Basel). 2019. PMID: 30678108 Free PMC article.
Interleukin-27 treated human macrophages induce the expression of novel microRNAs which may mediate anti-viral properties.
Swaminathan S, Hu X, Zheng X, Kriga Y, Shetty J, Zhao Y, Stephens R, Tran B, Baseler MW, Yang J, Lempicki RA, Huang D, Lane HC, Imamichi T. Swaminathan S, et al. Among authors: stephens r. Biochem Biophys Res Commun. 2013 May 3;434(2):228-34. doi: 10.1016/j.bbrc.2013.03.046. Epub 2013 Mar 25. Biochem Biophys Res Commun. 2013. PMID: 23535375 Free PMC article.
Distinguishing highly similar gene isoforms with a clustering-based bioinformatics analysis of PacBio single-molecule long reads.
Liang M, Raley C, Zheng X, Kutty G, Gogineni E, Sherman BT, Sun Q, Chen X, Skelly T, Jones K, Stephens R, Zhou B, Lau W, Johnson C, Imamichi T, Jiang M, Dewar R, Lempicki RA, Tran B, Kovacs JA, Huang DW. Liang M, et al. Among authors: stephens r. BioData Min. 2016 Apr 5;9:13. doi: 10.1186/s13040-016-0090-8. eCollection 2016. BioData Min. 2016. PMID: 27051465 Free PMC article.
A Benchmark Study on Error Assessment and Quality Control of CCS Reads Derived from the PacBio RS.
Jiao X, Zheng X, Ma L, Kutty G, Gogineni E, Sun Q, Sherman BT, Hu X, Jones K, Raley C, Tran B, Munroe DJ, Stephens R, Liang D, Imamichi T, Kovacs JA, Lempicki RA, Huang DW. Jiao X, et al. Among authors: stephens r. J Data Mining Genomics Proteomics. 2013 Jul 31;4(3):16008. doi: 10.4172/2153-0602.1000136. J Data Mining Genomics Proteomics. 2013. PMID: 24179701 Free PMC article.
Towards Better Precision Medicine: PacBio Single-Molecule Long Reads Resolve the Interpretation of HIV Drug Resistant Mutation Profiles at Explicit Quasispecies (Haplotype) Level.
Huang DW, Raley C, Jiang MK, Zheng X, Liang D, Rehman MT, Highbarger HC, Jiao X, Sherman B, Ma L, Chen X, Skelly T, Troyer J, Stephens R, Imamichi T, Pau A, Lempicki RA, Tran B, Nissley D, Lane HC, Dewar RL. Huang DW, et al. Among authors: stephens r. J Data Mining Genomics Proteomics. 2016 Jan;7(1):182. doi: 10.4172/2153-0602.1000182. Epub 2015 Nov 8. J Data Mining Genomics Proteomics. 2016. PMID: 26949565 Free PMC article.
Long-range enhancers on 8q24 regulate c-Myc.
Sotelo J, Esposito D, Duhagon MA, Banfield K, Mehalko J, Liao H, Stephens RM, Harris TJ, Munroe DJ, Wu X. Sotelo J, et al. Among authors: stephens rm. Proc Natl Acad Sci U S A. 2010 Feb 16;107(7):3001-5. doi: 10.1073/pnas.0906067107. Epub 2010 Jan 26. Proc Natl Acad Sci U S A. 2010. PMID: 20133699 Free PMC article.
Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts.
Ma L, Chen Z, Huang da W, Kutty G, Ishihara M, Wang H, Abouelleil A, Bishop L, Davey E, Deng R, Deng X, Fan L, Fantoni G, Fitzgerald M, Gogineni E, Goldberg JM, Handley G, Hu X, Huber C, Jiao X, Jones K, Levin JZ, Liu Y, Macdonald P, Melnikov A, Raley C, Sassi M, Sherman BT, Song X, Sykes S, Tran B, Walsh L, Xia Y, Yang J, Young S, Zeng Q, Zheng X, Stephens R, Nusbaum C, Birren BW, Azadi P, Lempicki RA, Cuomo CA, Kovacs JA. Ma L, et al. Among authors: stephens r. Nat Commun. 2016 Feb 22;7:10740. doi: 10.1038/ncomms10740. Nat Commun. 2016. PMID: 26899007 Free PMC article.
1,951 results