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EmbryoMiner: A new framework for interactive knowledge discovery in large-scale cell tracking data of developing embryos.
Schott B, Traub M, Schlagenhauf C, Takamiya M, Antritter T, Bartschat A, Löffler K, Blessing D, Otte JC, Kobitski AY, Nienhaus GU, Strähle U, Mikut R, Stegmaier J. Schott B, et al. Among authors: stegmaier j. PLoS Comput Biol. 2018 Apr 19;14(4):e1006128. doi: 10.1371/journal.pcbi.1006128. eCollection 2018 Apr. PLoS Comput Biol. 2018. PMID: 29672531 Free PMC article.
An ensemble-averaged, cell density-based digital model of zebrafish embryo development derived from light-sheet microscopy data with single-cell resolution.
Kobitski AY, Otte JC, Takamiya M, Schäfer B, Mertes J, Stegmaier J, Rastegar S, Rindone F, Hartmann V, Stotzka R, García A, van Wezel J, Mikut R, Strähle U, Nienhaus GU. Kobitski AY, et al. Among authors: stegmaier j. Sci Rep. 2015 Feb 25;5:8601. doi: 10.1038/srep08601. Sci Rep. 2015. PMID: 25712513 Free PMC article.
XPIWIT--an XML pipeline wrapper for the Insight Toolkit.
Bartschat A, Hübner E, Reischl M, Mikut R, Stegmaier J. Bartschat A, et al. Among authors: stegmaier j. Bioinformatics. 2016 Jan 15;32(2):315-7. doi: 10.1093/bioinformatics/btv559. Epub 2015 Sep 28. Bioinformatics. 2016. PMID: 26415725
Zebrafish biosensor for toxicant induced muscle hyperactivity.
Shahid M, Takamiya M, Stegmaier J, Middel V, Gradl M, Klüver N, Mikut R, Dickmeis T, Scholz S, Rastegar S, Yang L, Strähle U. Shahid M, et al. Among authors: stegmaier j. Sci Rep. 2016 Mar 31;6:23768. doi: 10.1038/srep23768. Sci Rep. 2016. PMID: 27029555 Free PMC article.
An objective comparison of cell-tracking algorithms.
Ulman V, Maška M, Magnusson KEG, Ronneberger O, Haubold C, Harder N, Matula P, Matula P, Svoboda D, Radojevic M, Smal I, Rohr K, Jaldén J, Blau HM, Dzyubachyk O, Lelieveldt B, Xiao P, Li Y, Cho SY, Dufour AC, Olivo-Marin JC, Reyes-Aldasoro CC, Solis-Lemus JA, Bensch R, Brox T, Stegmaier J, Mikut R, Wolf S, Hamprecht FA, Esteves T, Quelhas P, Demirel Ö, Malmström L, Jug F, Tomancak P, Meijering E, Muñoz-Barrutia A, Kozubek M, Ortiz-de-Solorzano C. Ulman V, et al. Among authors: stegmaier j. Nat Methods. 2017 Dec;14(12):1141-1152. doi: 10.1038/nmeth.4473. Epub 2017 Oct 30. Nat Methods. 2017. PMID: 29083403 Free PMC article.
66 results