Stegle O - Search Results

1

Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity.

Smallwood SA, Lee HJ, Angermueller C, Krueger F, Saadeh H, Peat J, Andrews SR, Stegle O, Reik W, Kelsey G. Smallwood SA, et al. Among authors: stegle o. Nat Methods. 2014 Aug;11(8):817-820. doi: 10.1038/nmeth.3035. Epub 2014 Jul 20. Nat Methods. 2014. PMID: 25042786 Free PMC article.

2

Whole-genome sequencing of multiple Arabidopsis thaliana populations.

Cao J, Schneeberger K, Ossowski S, Günther T, Bender S, Fitz J, Koenig D, Lanz C, Stegle O, Lippert C, Wang X, Ott F, Müller J, Alonso-Blanco C, Borgwardt K, Schmid KJ, Weigel D. Cao J, et al. Among authors: stegle o. Nat Genet. 2011 Aug 28;43(10):956-63. doi: 10.1038/ng.911. Nat Genet. 2011. PMID: 21874002

3

Multiple reference genomes and transcriptomes for Arabidopsis thaliana.

Gan X, Stegle O, Behr J, Steffen JG, Drewe P, Hildebrand KL, Lyngsoe R, Schultheiss SJ, Osborne EJ, Sreedharan VT, Kahles A, Bohnert R, Jean G, Derwent P, Kersey P, Belfield EJ, Harberd NP, Kemen E, Toomajian C, Kover PX, Clark RM, Rätsch G, Mott R. Gan X, et al. Among authors: stegle o. Nature. 2011 Aug 28;477(7365):419-23. doi: 10.1038/nature10414. Nature. 2011. PMID: 21874022 Free PMC article.

4

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome.

Becker C, Hagmann J, Müller J, Koenig D, Stegle O, Borgwardt K, Weigel D. Becker C, et al. Among authors: stegle o. Nature. 2011 Sep 20;480(7376):245-9. doi: 10.1038/nature10555. Nature. 2011. PMID: 22057020

5

Warped linear mixed models for the genetic analysis of transformed phenotypes.

Fusi N, Lippert C, Lawrence ND, Stegle O. Fusi N, et al. Among authors: stegle o. Nat Commun. 2014 Sep 19;5:4890. doi: 10.1038/ncomms5890. Nat Commun. 2014. PMID: 25234577 Free PMC article.

6

Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage.

Hagmann J, Becker C, Müller J, Stegle O, Meyer RC, Wang G, Schneeberger K, Fitz J, Altmann T, Bergelson J, Borgwardt K, Weigel D. Hagmann J, et al. Among authors: stegle o. PLoS Genet. 2015 Jan 8;11(1):e1004920. doi: 10.1371/journal.pgen.1004920. eCollection 2015 Jan. PLoS Genet. 2015. PMID: 25569172 Free PMC article.

7

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells.

Buettner F, Natarajan KN, Casale FP, Proserpio V, Scialdone A, Theis FJ, Teichmann SA, Marioni JC, Stegle O. Buettner F, et al. Among authors: stegle o. Nat Biotechnol. 2015 Feb;33(2):155-60. doi: 10.1038/nbt.3102. Epub 2015 Jan 19. Nat Biotechnol. 2015. PMID: 25599176

8

Computational and analytical challenges in single-cell transcriptomics.

Stegle O, Teichmann SA, Marioni JC. Stegle O, et al. Nat Rev Genet. 2015 Mar;16(3):133-45. doi: 10.1038/nrg3833. Epub 2015 Jan 28. Nat Rev Genet. 2015. PMID: 25628217 Review.

9

Efficient set tests for the genetic analysis of correlated traits.

Casale FP, Rakitsch B, Lippert C, Stegle O. Casale FP, et al. Among authors: stegle o. Nat Methods. 2015 Aug;12(8):755-8. doi: 10.1038/nmeth.3439. Epub 2015 Jun 15. Nat Methods. 2015. PMID: 26076425

10

A random forest approach to capture genetic effects in the presence of population structure.

Stephan J, Stegle O, Beyer A. Stephan J, et al. Among authors: stegle o. Nat Commun. 2015 Jun 25;6:7432. doi: 10.1038/ncomms8432. Nat Commun. 2015. PMID: 26109276 Free article.

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