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Whole-Genome Annotation with BRAKER.
Hoff KJ, Lomsadze A, Borodovsky M, Stanke M. Hoff KJ, et al. Among authors: stanke m. Methods Mol Biol. 2019;1962:65-95. doi: 10.1007/978-1-4939-9173-0_5. Methods Mol Biol. 2019. PMID: 31020555 Free PMC article.
Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus).
Stajich JE, Wilke SK, Ahrén D, Au CH, Birren BW, Borodovsky M, Burns C, Canbäck B, Casselton LA, Cheng CK, Deng J, Dietrich FS, Fargo DC, Farman ML, Gathman AC, Goldberg J, Guigó R, Hoegger PJ, Hooker JB, Huggins A, James TY, Kamada T, Kilaru S, Kodira C, Kües U, Kupfer D, Kwan HS, Lomsadze A, Li W, Lilly WW, Ma LJ, Mackey AJ, Manning G, Martin F, Muraguchi H, Natvig DO, Palmerini H, Ramesh MA, Rehmeyer CJ, Roe BA, Shenoy N, Stanke M, Ter-Hovhannisyan V, Tunlid A, Velagapudi R, Vision TJ, Zeng Q, Zolan ME, Pukkila PJ. Stajich JE, et al. Among authors: stanke m. Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11889-94. doi: 10.1073/pnas.1003391107. Epub 2010 Jun 14. Proc Natl Acad Sci U S A. 2010. PMID: 20547848 Free PMC article.
Verticillium transcription activator of adhesion Vta2 suppresses microsclerotia formation and is required for systemic infection of plant roots.
Tran VT, Braus-Stromeyer SA, Kusch H, Reusche M, Kaever A, Kühn A, Valerius O, Landesfeind M, Aßhauer K, Tech M, Hoff K, Pena-Centeno T, Stanke M, Lipka V, Braus GH. Tran VT, et al. Among authors: stanke m. New Phytol. 2014 Apr;202(2):565-581. doi: 10.1111/nph.12671. Epub 2014 Jan 17. New Phytol. 2014. PMID: 24433459 Free article.
Finding the missing honey bee genes: lessons learned from a genome upgrade.
Elsik CG, Worley KC, Bennett AK, Beye M, Camara F, Childers CP, de Graaf DC, Debyser G, Deng J, Devreese B, Elhaik E, Evans JD, Foster LJ, Graur D, Guigo R; HGSC production teams; Hoff KJ, Holder ME, Hudson ME, Hunt GJ, Jiang H, Joshi V, Khetani RS, Kosarev P, Kovar CL, Ma J, Maleszka R, Moritz RF, Munoz-Torres MC, Murphy TD, Muzny DM, Newsham IF, Reese JT, Robertson HM, Robinson GE, Rueppell O, Solovyev V, Stanke M, Stolle E, Tsuruda JM, Vaerenbergh MV, Waterhouse RM, Weaver DB, Whitfield CW, Wu Y, Zdobnov EM, Zhang L, Zhu D, Gibbs RA; Honey Bee Genome Sequencing Consortium. Elsik CG, et al. Among authors: stanke m. BMC Genomics. 2014 Jan 30;15:86. doi: 10.1186/1471-2164-15-86. BMC Genomics. 2014. PMID: 24479613 Free PMC article.
Comparative Genome Annotation.
König S, Romoth L, Stanke M. König S, et al. Among authors: stanke m. Methods Mol Biol. 2018;1704:189-212. doi: 10.1007/978-1-4939-7463-4_6. Methods Mol Biol. 2018. PMID: 29277866 Review.
Predicting Genes in Single Genomes with AUGUSTUS.
Hoff KJ, Stanke M. Hoff KJ, et al. Among authors: stanke m. Curr Protoc Bioinformatics. 2019 Mar;65(1):e57. doi: 10.1002/cpbi.57. Epub 2018 Nov 22. Curr Protoc Bioinformatics. 2019. PMID: 30466165
Multi-Genome Annotation with AUGUSTUS.
Nachtweide S, Stanke M. Nachtweide S, et al. Among authors: stanke m. Methods Mol Biol. 2019;1962:139-160. doi: 10.1007/978-1-4939-9173-0_8. Methods Mol Biol. 2019. PMID: 31020558
114 results