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Simultaneous gene finding in multiple genomes.
König S, Romoth LW, Gerischer L, Stanke M. König S, et al. Among authors: stanke m. Bioinformatics. 2016 Nov 15;32(22):3388-3395. doi: 10.1093/bioinformatics/btw494. Epub 2016 Jul 27. Bioinformatics. 2016. PMID: 27466621 Free PMC article.
AUGUSTUS: a web server for gene finding in eukaryotes.
Stanke M, Steinkamp R, Waack S, Morgenstern B. Stanke M, et al. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W309-12. doi: 10.1093/nar/gkh379. Nucleic Acids Res. 2004. PMID: 15215400 Free PMC article.
Tissue-specific transcriptomics, chromosomal localization, and phylogeny of chemosensory and odorant binding proteins from the red flour beetle Tribolium castaneum reveal subgroup specificities for olfaction or more general functions.
Dippel S, Oberhofer G, Kahnt J, Gerischer L, Opitz L, Schachtner J, Stanke M, Schütz S, Wimmer EA, Angeli S. Dippel S, et al. Among authors: stanke m. BMC Genomics. 2014 Dec 18;15:1141. doi: 10.1186/1471-2164-15-1141. BMC Genomics. 2014. PMID: 25523483 Free PMC article.
The iBeetle large-scale RNAi screen reveals gene functions for insect development and physiology.
Schmitt-Engel C, Schultheis D, Schwirz J, Ströhlein N, Troelenberg N, Majumdar U, Dao VA, Grossmann D, Richter T, Tech M, Dönitz J, Gerischer L, Theis M, Schild I, Trauner J, Koniszewski ND, Küster E, Kittelmann S, Hu Y, Lehmann S, Siemanowski J, Ulrich J, Panfilio KA, Schröder R, Morgenstern B, Stanke M, Buchhholz F, Frasch M, Roth S, Wimmer EA, Schoppmeier M, Klingler M, Bucher G. Schmitt-Engel C, et al. Among authors: stanke m. Nat Commun. 2015 Jul 28;6:7822. doi: 10.1038/ncomms8822. Nat Commun. 2015. PMID: 26215380 Free PMC article.
Large scale RNAi screen in Tribolium reveals novel target genes for pest control and the proteasome as prime target.
Ulrich J, Dao VA, Majumdar U, Schmitt-Engel C, Schwirz J, Schultheis D, Ströhlein N, Troelenberg N, Grossmann D, Richter T, Dönitz J, Gerischer L, Leboulle G, Vilcinskas A, Stanke M, Bucher G. Ulrich J, et al. Among authors: stanke m. BMC Genomics. 2015 Sep 3;16(1):674. doi: 10.1186/s12864-015-1880-y. BMC Genomics. 2015. PMID: 26334912 Free PMC article.
Comparative Genome Annotation.
König S, Romoth L, Stanke M. König S, et al. Among authors: stanke m. Methods Mol Biol. 2018;1704:189-212. doi: 10.1007/978-1-4939-7463-4_6. Methods Mol Biol. 2018. PMID: 29277866 Review.
Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotation.
Fiddes IT, Armstrong J, Diekhans M, Nachtweide S, Kronenberg ZN, Underwood JG, Gordon D, Earl D, Keane T, Eichler EE, Haussler D, Stanke M, Paten B. Fiddes IT, et al. Among authors: stanke m. Genome Res. 2018 Jul;28(7):1029-1038. doi: 10.1101/gr.233460.117. Epub 2018 Jun 8. Genome Res. 2018. PMID: 29884752 Free PMC article.
114 results